Epigenetik Yaklaşımlar ve Tarımda Önemi
Özet
Referanslar
Varotto, S.; Tani, E.; Abraham, E.; Krugman, T.; Kapazoglou, A.; Melzer, R.; Radanovi´c, A.; Miladinovi´c, D. Epigenetics: Possible Applications in Climate-Smart Crop Breeding. J. Exp. Bot. 2020; 71, 5223–5236.
Youngson NA.; Whitelaw, E. Transgenerational epigenetic effects. Annu Rev Genom Hum 2008; G, 9, 233- 257.
Khatib, H. 2012. Livestock Epigenetics. Wiley Blackwell, Oxford.
Holliday, R. Epigenetics: a historical overview. Epigenetics, 2006; 1(2), 76-80.
Karaçay, B. Kalıtımın yeni boyutu: epigenetik. Bilim ve Teknik Dergisi, 505, 2009; 32-37.
Güneş, S., & Kulaç, T. The role of epigenetics in spermatogenesis. Turkish journal of urology, 2013; 39(3), 181.
Karaca M, Aydin A, Ince AG. Cytosine methylation polymorphisms in cotton using TD-MS-RAPD PCR. Modern Phytomorphology. 2009; 13:13-19.
Coolen, M.W., Statham, W.L., Qu, W., Campbell, M.J., Henders, A.K., Montgomery, G.W., Martin, N.G., Susan, C.J. Impact of the genome on the epigenome is manifested in DNA methylation patterns of imprinted regions in monozygotic and dizygotic twins. PLoS ONE 2011; 6(10): e25590.
İzmirli M, Tufan T, Alptekin D. DNA Methylation. Arşiv Kaynak Tarama Dergisi (Archives Medical Review Journal), 21(4): 2012;274-282
Karaçay, 2009) Karaçay B (2009): Kalıtımın Yeni Boyutu: Epigenetik. Bilim
Heijmans, B.T., Tobia, E.W., Steinb, A.D., Putterc, H., Blauwd, G.J., Sussere, E.S., Slagbooma, P.E., Lumeye,L.H. Persistent epigenetic differences associated with prenatal exposure to famine in humans. PNAS 105: 2008; 17046–17049.
Dietrich, M. R. Richard Goldschmidt: hopeful monsters and other'heresies'. Nature Reviews Genetics, 2003; 4(1), 68
Holliday, R. Epigenetics: a historical overview. Epigenetics, 2006; 1(2), 76-80
Manikkam, M., Tracey, R., Guerrero-Bosagna, C., & Skinner, M. K. Plastics derived endocrine disruptors (BPA, DEHP and DBP) induce epigenetic transgenerational inheritance of obesity, reproductive disease and sperm epimutations. PloS ONE, 2013 8(1), e55387.
Karaçay, B. Kalıtımın yeni boyutu: epigenetik. Bilim ve Teknik Dergisi, 505,2009; 32-37.
Karaçay, B. Kalıtımın yeni boyutu: epigenetik. Bilim ve Teknik Dergisi, 505, 2009;32-37.
Tchurikov, N.A. Molecular Mechanisms of Epigenetics. Biochemistry. 70, 406-Teknik Aralık: 2005; 32-37
Bora G, Yurter HE Epigenetik Hastalıklar ve Tedavi Yaklaşımları, Hacettepe Tıp Dergisi; 2005; 38: 48-54
Meaney, M. J., and Szyf, M. Maternal care as a model for experience-dependent chromatin plasticity Trends in Neuroscience, 28(9), 2005;456-463.
Yokus B.: Epigenom ve Epigenetik Dicle Üniv Vet Fak Derg 2013; 1(2):5-13
Cokus, S. J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C. D., & Jacobsen, S. E. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature, 452(7184), 2008; 215-219.
Kim, D. G., Jung, K. H., Lee, D. G., Yoon, J. H., Choi, K. S., Kwon, S. W., ... & Kim, Y. S. 20 (S)-Ginsenoside Rg3 is a novel inhibitor of autophagy and sensitizes hepatocellular carcinoma to doxorubicin. Oncotarget, 2014; 5(12), 4438.
Bartels, A.; Han, Q.; Nair, P.; Stacey, L.; Gaynier, H.; Mosley, M.; Huang, Q.Q.; Pearson, J.K.; Hsieh, T.-F.; An, Y.-Q.C.; et al. Biochimica et Biophysica Acta. 1809: 2018; 459-468.
Meyer, P. DNA Methylation Systems and Targets in Plants. FEBS Lett. 2011; 585, 2008–2015 Molecular Research, 15, 1. doi: 10.4238/gmr16039879
Egger G, Liang G, Aparicio A, Jones AP. Epigenetics in human disease and prospects for epigenetic therapy. Nature. 2004; 429:457-63
Sasaki, E., Kawakatsu, T., Ecker, J. R., & Nordborg, M. Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana. PLoS genetics, 2009; 15(12), e1008492.
Al-Lawati, A., Al-Bahry, S., Victor, R., Al-Lawati, A. H., & Yaish, M. W. Salt stress alters DNA methylation levels in alfalfa (Medicago spp). Genet Mol Res, 2016; 15(1), 15018299.
Maury, S., Huguet, F., Leguay, T., Lacombe, F., Maynadié, M., Girard, S., & Béné, M. C. Adverse prognostic significance of CD20 expression in adults with Philadelphia chromosome-negative B-cell precursor acute lymphoblastic leukemia. haematologica, 2010; 95(2), 324.
Salmon, A., Clotault, J., Jenczewski, E., Chable, V. and Manzanares-Dauleux, M.J. Brassica oleracea Displays a High Level of DNA Methylation Polymorphism. Plant Science, 174, 2008; 61-70.
Zhang, Y. Mechanisms of epigenetic inheritance. Current opinion in cell biology, 19(3), 2007;266-272
Şahin, Ö., Ayaz, G. B., ve Ayaz, U. Bitki epigenetiği. Madde diyalektik ve Toplum, 1(2),2018; 135-144.
Zhang, H.; Ma, Z.-Y.; Zeng, L.; Tanaka, K.; Zhang, C.-J.; Ma, J.; Bai, G.; Wang, P.; Zhang, S.-W.; Liu, Z.-W. DTF1 Is a Core Component of RNA-Directed DNA Methylation and May Assist in the Recruitment of Pol IV. Proc. Natl. Acad. Sci. USA 2013; 110, 8290–8295.
Chen, Z.J. Genomic and Epigenetic Insights into the Molecular Bases of Heterosis.Nature Reviews Genetics,2013; 14, 471-482
Richards EJ. Natural epigenetic variation in plant species: a view from the field. Current Opinion in Genetics and Development. 2011; 14:204-209.
Kakutani, T. Epi-alleles in plants: inheritance of epigenetic information over generations. Plant and cell physiology, 43(10), 2002; 1106-1111.
Richards EJ. Natural epigenetic variation in plant species: a view from the field. Current Opinion in Genetics and Development. 2011; 14:204-209.
Wang, Q., Zhang, M., Teng, W., Zhou, Z., & Tan, K.A review: research progress of biology in ark shell Scapharca subcrenata insight from aquaculture. Journal of Dalian Ocean University, 2015; 30(4), 437-443.
Ashikawa, I. Surveying CpG Methylation at 50-CCGG in the Genomes of Rice Cultivars. Plant. Mol. Biol. 2001; (45) 31–39.
Song, J. Y., Chang, W., & Song, J. W.Cluster analysis on the structure of the cryptocurrency market via Bitcoin–Ethereum filtering. Physica A: Statistical Mechanics and its Applications, 2019; 527, 121339.
Boyko A, Kovalchuk I. Epigenetic control of plant stress response. Environmental Mutagenesis and Genomics. 2008; 49:61-72.
Sunkar, R., Chinnusamy, V., Zhu, J., Zhu, J. K. Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Science, 2007;12: 301–309.
Costa, L., A.R. Vicente, P.M. Civello, A.R. Chaves and G.A. Martinez.UV-C treatment delays postharvest senescence in broccoli florets. Postharvest Biol. Technol. 2006; 39:204-210.
Chen, C., Ridzon, D.A., Broomer, A.J., Zhou, Z., Lee, D.H., Nguyen, J.T., Barbisin, M., Xu, N.L., Mahuvakar, V. R., Andersen, M.R., Lao, K.Q., Livak, K.J., Guegler, K.J.,Real-time quantification of microRNAs by stem–loop RT– PCR. Nucleic Acids Research, 2005; 33 (20), e179
Hauser, A. R., Jain, M., Bar-Meir, M., & McColley, S. A. Clinical significance of microbial infection and adaptation in cystic fibrosis. Clinical microbiology reviews, 2011;24(1), 29-70.
Reik, W., Dean, W., Walter, J. Epigenetic reprogramming in mammalian development. Science, 293: 2001; 1089-1093.
Cushman JC. Bohnert HJ. Genomic approaches to plant stress tolerance. Curr Opin Plant Biol, 2000; 3: 117-24.
Heo JB, Lee YS, Sung S. Epigenetic regulation by long noncoding RNAs in plants. Chromosome Research. 2013; 21:685-693.
Kim, S., Park, B., Kwon, S., Kim, J., Lim, M., Park, Y., Kim, D., Suh., S., Jin, Y., Ahn, J., ve Lee, Y. Delayed flowering time in Arabidopsis and Brassica rapa by the overexpression of flowerıng locus C (FLC) homologsisolated from Chinese cabbage (Brassica rapa L. ssp. pekinensis). Plant Cell Reports, 2007; 26(3), 327-336.
Saze, H., Shiraishi, A., Miura, A., & Kakutani, T. Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. science, 319(5862), 2008;462-465.
Liu, W.; Zhang, Y.; He, H.; He, G.; Deng, X.W. From Hybrid Genomes to Heterotic Trait Output: Challenges and Opportunities.Curr. Opin. Plant Biol. 2022; 66, 102193.
Chen, Z.J. Genomic and Epigenetic Insights into the Molecular Bases of Heterosis.Nature Reviews Genetics,2013; 14, 471-482
Borges D, Guzman-Novoa E, Goodwin PH, Effects of prebiotics and probiotics on honey bees (apis mellifera) infected with the microsporidian parasite nosema ceranae. Microorganisms, 2021;9(3), 481.
Güvercin, R. Ş. Pamukta (Gossypium ssp.) F1 melezlerinin lif verimine etkili bazı karakterlerde heterosis, heterobeltiosis ve ekonomik heterosis. Journal of Agricultural Sciences,2011; 17(2).
Swanson JM, Kinsbourne M, Nigg J, Lanphear B, Stefanatos GA, Volkow N et al. Etiologic subtypes of attentiondeficit/hyperactivity disorder: brain imaging, molecular genetic and environmental factors and the dopamine hypothesis. Neuropsychol Rev, 2007;17:39-59.
İnce, A. G., & Karaca, M. Epigenetik Mekanizmalar ve Tarımsal Üretimde Epigenetik Yaklaşımlar. Türk Bilimsel Derlemeler Dergisi, 2009;12(2), 51-58.
Ayaz, G. B., Şahin, Ö., & Ayaz, U. Epigenetik alanındaki tarım uygulamaları. Madde, diyalektik ve toplum, 3, 2018;254-262.
Zhang, Y. Mechanisms of epigenetic inheritance. Current opinion in cell biology, 19(3), 2007; 266-272
Jablonka, E., & Lamb, M. J. The changing concept of epigenetics. Annals of the New York Academy of Sciences, 981(1),2002; 82-96.
Referanslar
Varotto, S.; Tani, E.; Abraham, E.; Krugman, T.; Kapazoglou, A.; Melzer, R.; Radanovi´c, A.; Miladinovi´c, D. Epigenetics: Possible Applications in Climate-Smart Crop Breeding. J. Exp. Bot. 2020; 71, 5223–5236.
Youngson NA.; Whitelaw, E. Transgenerational epigenetic effects. Annu Rev Genom Hum 2008; G, 9, 233- 257.
Khatib, H. 2012. Livestock Epigenetics. Wiley Blackwell, Oxford.
Holliday, R. Epigenetics: a historical overview. Epigenetics, 2006; 1(2), 76-80.
Karaçay, B. Kalıtımın yeni boyutu: epigenetik. Bilim ve Teknik Dergisi, 505, 2009; 32-37.
Güneş, S., & Kulaç, T. The role of epigenetics in spermatogenesis. Turkish journal of urology, 2013; 39(3), 181.
Karaca M, Aydin A, Ince AG. Cytosine methylation polymorphisms in cotton using TD-MS-RAPD PCR. Modern Phytomorphology. 2009; 13:13-19.
Coolen, M.W., Statham, W.L., Qu, W., Campbell, M.J., Henders, A.K., Montgomery, G.W., Martin, N.G., Susan, C.J. Impact of the genome on the epigenome is manifested in DNA methylation patterns of imprinted regions in monozygotic and dizygotic twins. PLoS ONE 2011; 6(10): e25590.
İzmirli M, Tufan T, Alptekin D. DNA Methylation. Arşiv Kaynak Tarama Dergisi (Archives Medical Review Journal), 21(4): 2012;274-282
Karaçay, 2009) Karaçay B (2009): Kalıtımın Yeni Boyutu: Epigenetik. Bilim
Heijmans, B.T., Tobia, E.W., Steinb, A.D., Putterc, H., Blauwd, G.J., Sussere, E.S., Slagbooma, P.E., Lumeye,L.H. Persistent epigenetic differences associated with prenatal exposure to famine in humans. PNAS 105: 2008; 17046–17049.
Dietrich, M. R. Richard Goldschmidt: hopeful monsters and other'heresies'. Nature Reviews Genetics, 2003; 4(1), 68
Holliday, R. Epigenetics: a historical overview. Epigenetics, 2006; 1(2), 76-80
Manikkam, M., Tracey, R., Guerrero-Bosagna, C., & Skinner, M. K. Plastics derived endocrine disruptors (BPA, DEHP and DBP) induce epigenetic transgenerational inheritance of obesity, reproductive disease and sperm epimutations. PloS ONE, 2013 8(1), e55387.
Karaçay, B. Kalıtımın yeni boyutu: epigenetik. Bilim ve Teknik Dergisi, 505,2009; 32-37.
Karaçay, B. Kalıtımın yeni boyutu: epigenetik. Bilim ve Teknik Dergisi, 505, 2009;32-37.
Tchurikov, N.A. Molecular Mechanisms of Epigenetics. Biochemistry. 70, 406-Teknik Aralık: 2005; 32-37
Bora G, Yurter HE Epigenetik Hastalıklar ve Tedavi Yaklaşımları, Hacettepe Tıp Dergisi; 2005; 38: 48-54
Meaney, M. J., and Szyf, M. Maternal care as a model for experience-dependent chromatin plasticity Trends in Neuroscience, 28(9), 2005;456-463.
Yokus B.: Epigenom ve Epigenetik Dicle Üniv Vet Fak Derg 2013; 1(2):5-13
Cokus, S. J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C. D., & Jacobsen, S. E. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature, 452(7184), 2008; 215-219.
Kim, D. G., Jung, K. H., Lee, D. G., Yoon, J. H., Choi, K. S., Kwon, S. W., ... & Kim, Y. S. 20 (S)-Ginsenoside Rg3 is a novel inhibitor of autophagy and sensitizes hepatocellular carcinoma to doxorubicin. Oncotarget, 2014; 5(12), 4438.
Bartels, A.; Han, Q.; Nair, P.; Stacey, L.; Gaynier, H.; Mosley, M.; Huang, Q.Q.; Pearson, J.K.; Hsieh, T.-F.; An, Y.-Q.C.; et al. Biochimica et Biophysica Acta. 1809: 2018; 459-468.
Meyer, P. DNA Methylation Systems and Targets in Plants. FEBS Lett. 2011; 585, 2008–2015 Molecular Research, 15, 1. doi: 10.4238/gmr16039879
Egger G, Liang G, Aparicio A, Jones AP. Epigenetics in human disease and prospects for epigenetic therapy. Nature. 2004; 429:457-63
Sasaki, E., Kawakatsu, T., Ecker, J. R., & Nordborg, M. Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana. PLoS genetics, 2009; 15(12), e1008492.
Al-Lawati, A., Al-Bahry, S., Victor, R., Al-Lawati, A. H., & Yaish, M. W. Salt stress alters DNA methylation levels in alfalfa (Medicago spp). Genet Mol Res, 2016; 15(1), 15018299.
Maury, S., Huguet, F., Leguay, T., Lacombe, F., Maynadié, M., Girard, S., & Béné, M. C. Adverse prognostic significance of CD20 expression in adults with Philadelphia chromosome-negative B-cell precursor acute lymphoblastic leukemia. haematologica, 2010; 95(2), 324.
Salmon, A., Clotault, J., Jenczewski, E., Chable, V. and Manzanares-Dauleux, M.J. Brassica oleracea Displays a High Level of DNA Methylation Polymorphism. Plant Science, 174, 2008; 61-70.
Zhang, Y. Mechanisms of epigenetic inheritance. Current opinion in cell biology, 19(3), 2007;266-272
Şahin, Ö., Ayaz, G. B., ve Ayaz, U. Bitki epigenetiği. Madde diyalektik ve Toplum, 1(2),2018; 135-144.
Zhang, H.; Ma, Z.-Y.; Zeng, L.; Tanaka, K.; Zhang, C.-J.; Ma, J.; Bai, G.; Wang, P.; Zhang, S.-W.; Liu, Z.-W. DTF1 Is a Core Component of RNA-Directed DNA Methylation and May Assist in the Recruitment of Pol IV. Proc. Natl. Acad. Sci. USA 2013; 110, 8290–8295.
Chen, Z.J. Genomic and Epigenetic Insights into the Molecular Bases of Heterosis.Nature Reviews Genetics,2013; 14, 471-482
Richards EJ. Natural epigenetic variation in plant species: a view from the field. Current Opinion in Genetics and Development. 2011; 14:204-209.
Kakutani, T. Epi-alleles in plants: inheritance of epigenetic information over generations. Plant and cell physiology, 43(10), 2002; 1106-1111.
Richards EJ. Natural epigenetic variation in plant species: a view from the field. Current Opinion in Genetics and Development. 2011; 14:204-209.
Wang, Q., Zhang, M., Teng, W., Zhou, Z., & Tan, K.A review: research progress of biology in ark shell Scapharca subcrenata insight from aquaculture. Journal of Dalian Ocean University, 2015; 30(4), 437-443.
Ashikawa, I. Surveying CpG Methylation at 50-CCGG in the Genomes of Rice Cultivars. Plant. Mol. Biol. 2001; (45) 31–39.
Song, J. Y., Chang, W., & Song, J. W.Cluster analysis on the structure of the cryptocurrency market via Bitcoin–Ethereum filtering. Physica A: Statistical Mechanics and its Applications, 2019; 527, 121339.
Boyko A, Kovalchuk I. Epigenetic control of plant stress response. Environmental Mutagenesis and Genomics. 2008; 49:61-72.
Sunkar, R., Chinnusamy, V., Zhu, J., Zhu, J. K. Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Science, 2007;12: 301–309.
Costa, L., A.R. Vicente, P.M. Civello, A.R. Chaves and G.A. Martinez.UV-C treatment delays postharvest senescence in broccoli florets. Postharvest Biol. Technol. 2006; 39:204-210.
Chen, C., Ridzon, D.A., Broomer, A.J., Zhou, Z., Lee, D.H., Nguyen, J.T., Barbisin, M., Xu, N.L., Mahuvakar, V. R., Andersen, M.R., Lao, K.Q., Livak, K.J., Guegler, K.J.,Real-time quantification of microRNAs by stem–loop RT– PCR. Nucleic Acids Research, 2005; 33 (20), e179
Hauser, A. R., Jain, M., Bar-Meir, M., & McColley, S. A. Clinical significance of microbial infection and adaptation in cystic fibrosis. Clinical microbiology reviews, 2011;24(1), 29-70.
Reik, W., Dean, W., Walter, J. Epigenetic reprogramming in mammalian development. Science, 293: 2001; 1089-1093.
Cushman JC. Bohnert HJ. Genomic approaches to plant stress tolerance. Curr Opin Plant Biol, 2000; 3: 117-24.
Heo JB, Lee YS, Sung S. Epigenetic regulation by long noncoding RNAs in plants. Chromosome Research. 2013; 21:685-693.
Kim, S., Park, B., Kwon, S., Kim, J., Lim, M., Park, Y., Kim, D., Suh., S., Jin, Y., Ahn, J., ve Lee, Y. Delayed flowering time in Arabidopsis and Brassica rapa by the overexpression of flowerıng locus C (FLC) homologsisolated from Chinese cabbage (Brassica rapa L. ssp. pekinensis). Plant Cell Reports, 2007; 26(3), 327-336.
Saze, H., Shiraishi, A., Miura, A., & Kakutani, T. Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. science, 319(5862), 2008;462-465.
Liu, W.; Zhang, Y.; He, H.; He, G.; Deng, X.W. From Hybrid Genomes to Heterotic Trait Output: Challenges and Opportunities.Curr. Opin. Plant Biol. 2022; 66, 102193.
Chen, Z.J. Genomic and Epigenetic Insights into the Molecular Bases of Heterosis.Nature Reviews Genetics,2013; 14, 471-482
Borges D, Guzman-Novoa E, Goodwin PH, Effects of prebiotics and probiotics on honey bees (apis mellifera) infected with the microsporidian parasite nosema ceranae. Microorganisms, 2021;9(3), 481.
Güvercin, R. Ş. Pamukta (Gossypium ssp.) F1 melezlerinin lif verimine etkili bazı karakterlerde heterosis, heterobeltiosis ve ekonomik heterosis. Journal of Agricultural Sciences,2011; 17(2).
Swanson JM, Kinsbourne M, Nigg J, Lanphear B, Stefanatos GA, Volkow N et al. Etiologic subtypes of attentiondeficit/hyperactivity disorder: brain imaging, molecular genetic and environmental factors and the dopamine hypothesis. Neuropsychol Rev, 2007;17:39-59.
İnce, A. G., & Karaca, M. Epigenetik Mekanizmalar ve Tarımsal Üretimde Epigenetik Yaklaşımlar. Türk Bilimsel Derlemeler Dergisi, 2009;12(2), 51-58.
Ayaz, G. B., Şahin, Ö., & Ayaz, U. Epigenetik alanındaki tarım uygulamaları. Madde, diyalektik ve toplum, 3, 2018;254-262.
Zhang, Y. Mechanisms of epigenetic inheritance. Current opinion in cell biology, 19(3), 2007; 266-272
Jablonka, E., & Lamb, M. J. The changing concept of epigenetics. Annals of the New York Academy of Sciences, 981(1),2002; 82-96.
