Fenotip, Varyans Bileşenleri ve Genetik Parametre Tahmini

Özet

Referanslar

Štrbac LJ, Dedovıć, D, Trıvunovıć , S, Jankovıć, D, Šaran, M, Stanojevıć, D, Đedovıć, R, Pracner, D. Herıtabılıty And Repeatabılıty Estımates For Mılk Productıon Traıts Usıng Phenotypıc, Pedıgree-Based And Genomıc Data Of Serbıan Holsteın Cows, Contemporary Agriculture; 2023a; 72, 4; 251-260.

Štrbac Lj., Pracner D., Šaran M., Janković D., Trivunović S., Ivković M., Tarjan L., Dedović N. Mathematical Modeling and Software Tools for Breeding Value Estimation Based on Phenotypic, Pedigree and Genomic Information of Holstein Friesian Cattle in Serbia. Animals; 2023b; 13, 597.

Düzgüneş, O., Akman, N., Eliçin, A. Hayvan Islahı. Ankara Üniversitesi Ziraat Fakültesi Zootekni Bölümü, Ankara 4. Baskı Yay. No:1535. Ders Kitabı: 2003; 488.

Xu, S. Quantitative Genetics, Department of Botany and Plant Sciences University of California, Riverside Riverside; 2022, CA, USA, ISBN 978-3-030-83939-0 ISBN 978-3-030-83940-6 (eBook) https://doi.org/10.1007/978-3-030-83940-6.

Tüzemen, N., Yanar, M., Akbulut, Ö. Hayvan Islahı, Dördüncü Baskı, No: 230, Atatürk Üniversitesi Ziraat Fakültesi Ofset Tesisisi; 2013. Erzurum.539S.

Kor Oldenbroek en Liesbeth van der Waaij.Textbook animal breeding, Animal breeding and genetics for BSc students Centre for Genetic Resources and Animal Breeding and Genomics Group, Wageningen University and Research Centre, the Netherlands. Groen Kennisnet; , 2014.

Simm, G. Genetic Improvement of Cattle and Sheep. Farming Press; 1998.

Beavis, W., Lamkey, K., Espinosa, K., & Mahama, A. A. Components of variance. Quantitative genetics for plant breeding. Iowa State University Digital Press; 2023.

Bourdon, R. M. Understanding Animal Breeding. Prentice Hall; 2000.

Düzgüneş, O., Akman, N. Variyasyon Kynakları, Ankara Üniversitesi Ziraat Fakültesi Yayınları Yayın no:1408;1995, 146s.

Tuncel, E. Hayvan Islahı, Uludağ Üniversitesi Ziraat Fakültesi Ders Notları, No: 46;2016, 242s.

Hutu, I., Oldenbroek, K, van der Waaij, L., 2020. Animal breeding and husbandry,Agroprint, Timisoara, 2020.

Lynch, M., Walsh, B. Genetics and Analysis of Quantitative Traits. Sinauer Associates; 1998.

Akçapınar, H. Hayvan Islahı. Ankara Üniversitesi Ziraat Fakültesi Yayınları; 2002.

Boztepe, S., Keskin, İ., Zülkadir, U., Aytekin, İ. Uygulamalı Hayvan Islahı, Necmettin Erbakan Üniversitesi yayınları No:135;2022, 262 s.

Bemji, M.N., Adeleke, Heredity and Environment, chrome-extension://efaidnbmnnnibpcajpcglclefindmkaj/https://funaab.edu.ng/funaabocw/opencourseware/Heredity%20and%20Environment.pdf;2025, (Erişim Tarihi, 2025).

Mrode, R. A. (2014). Linear Models for the Prediction of Animal Breeding Values. CABI.

Ruiz-López, F. J., Aguilar, I., Misztal, I., & Tsuruta, S. Effect of age on genetic parameter estimation for milk traits in Holstein cattle. Tropical Animal Health and Production;2019, 51, 167-173. https://doi.org/10.1007/s11250-019-02023-9.

Fouéré, L., Canario, L., David, I. Parental age and heat stress affect epigenetic marks and offspring performance in livestock. Genetics Selection Evolution;2024; 56(1), 12. https://doi.org/10.1186/s12711-024-00918-2

Falconer, D.S., Mackay, T.F. Introduction to Quantitative Genetics;1996, 4th edn. Longman, Harlow.

Van Vleck, L. D., Pollak, E. J., & Quaas, R. L. "Genetic relationships among characteristics of livestock." Journal of Animal Science;1987, 64(6), 1750-1761.

Groeneveld, L.F., Lenstra, J.A., Eding,H., Toro, M.A., Scherf, B., Pilling, D., Negrini, R., Finlay, E.K., Jianlin, H., Groeneveld, E., Weigend, S. “Genetic diversity in farm animals – a review.” Animal Genetics; 2010; 41, 6–31. doi:10.1111/j.1365-2052.2010.02038.x

Grobet L, Martin LJ, Poncelet D, Pirottin D, Brouwers B, Riquet J, Schoeberlein A, Dunner S, Ménissier F, Massabanda J, Fries R, Hanset R, Georges M. A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle. Nat Genet;1997; 17(1):71-4.

McPherron, A. C., Lawler, A. M., Lee, S. J. Regulation of skeletal muscle mass in mice by a new TGF-β superfamily member. Nature;1997;387(6628), 83-90.

Fujii, J., Orsu, K., Zorzato, F., De Leon, S., Khanna, V.K, Weıler, J. E., O'brıen, P. J., Maclennan, D. H., 1991. Identification of a Mutation in Porcine Ryanodine Receptor Associated with Malignant Hyperthermia, Science;1991; 253(5018), 448–451.

Grisart, B., Farnir, F., Karim, L., Cambisano, L., Kim, J. J., Kvasz, A., Mni, M., Simon, P., Frère, J. M., Coppieters, W., Georges, M. Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition. Proceedings of the National Academy of Sciences of the United States of America (PNAS); 2002; 99(14), 9300-9305. https://doi.org/10.1073/pnas.142283699.

Kijas, J M H., Wales, R., Törnsten, A., Chardon, P., Moller, M., Andersson, L., 1998. Melanocortin Receptor 1 (MC1R) Mutations and Coat Color in Pigs, Genetics;1998;150, (3), 1, 1177-1185, https://doi.org/10.1093/genetics/150.3.1177.

Ng-Kwai-Hang, K. F., Hayes, J. F., Moxley, J. E., & Monardes, H. G. Effect of genetic variants of milk proteins on milk composition and cheese yield. Journal of Dairy Science; (1986); 69(1), 22–29. https://doi.org/10.3168/jds.S0022-0302(86)80364-1.

Cemal, İ., Karaca, O. Çiftlik Hayvanlarında Major Genlerin Belirlenmesi Ve Genotip Ayrımı, OMÜ Zir. Fak. Dergisi; 2006; 21 (1):105-115.

Hayes, B. J., Bowman, P. J., Chamberlain, A. J., & Goddard, M. E. Genomic selection in dairy cattle: Progress and challenges. Journal of Dairy Science;2009; 92(2), 433-443. https://doi.org/10.3168/jds.2008-1646

Van Eenennaam, A. L., Weigel, K. A., Young, A. E., Cleveland, M. A., & Dekkers, J. C. M. Applied animal genomics: Results from the field. Annual Review of Animal Biosciences;2014; 2, 105-139. https://doi.org/10.1146/annurev-animal-022513-114209.

Wolc, A., Arango, J., Settar, P., Fulton, J. E., O’Sullivan, N. P., Dekkers, J. C. M., & Fernando, R. Genome-wide association analysis for egg production and quality in layer chickens. Poultry Science; 2011; 90(12), 2811–2819. https://doi.org/10.3382/ps.2011-01634

Patterson, H.D., Thompson, R. Recovery of Inter-Block Information When Block Size Are Unequal. Biometrika;1971; 58, 545-554. http://dx.doi.org/10.1093/biomet/58.3.545.

Henderson, C. R. "Best Linear Unbiased Estimation and Prediction under a Selection Model". Biometrics; 1975.

Cesarani A., Pocrnic I., Macciotta N.P.P., Fragomeni B.O., Misztal I., Lourenco D.A.L. Bias in heritability estimates from genomic restricted maximum likelihood methods under different genotyping strategies. Journal of Animal Breeding and Genetics;2019; 136: 40-50.

Fisher, R. A. Statistical methods for research workers. Oliver and Boyd, London; 1925, Ed. 1.

Crump, S. L. The estimation of variance components in analysis of variance. Biom. Bull;1946; 2:7-11.

Crump, S. L. The present status of variance components analysis. Biometrics;1951; 7:l.

Eisenhart, C.The assumptions underlying analysis of variance. Biometrics;1947; 3:1-21.

Henderson, C. R. Estimation of Variance and Covariance Components. Biometrics;1953.

Hartley H.O, Rao J.N.K. Maximum likelihood estimation for the mixed analysis of variance model. Biometrika; 1967;54:93-108.

Rao, C. R. Minimum variance quadratic unbi ased estimation of variance components. J. Multivariate Anal;1971; 1:445.

Rao, C. R. 1971b. Estimation of variance and covari- ance components-MINQuE theory. Journal of Multivariate Analysis; 1971; 3(4);445-456.

44.Searle, R., A. Another look at Henderson’s methods of estimating variance components. Biometrics;1968; 24: 749-778.

Searle, R., A. C.R.Henderson, the Statistican; And His Contributions to Variance Components Estimation1. J.Dairy Sci;1991;74(11):4035-4044.

Meyer, K. Estimating Variances and Covariances for Multivariate Animal Models by Restricted Maximum Likelihood. Genetics, Selection, Evolution;1991; 23 :49-68.

Meyer, K. Estimating covariance functions for longitudinal data using a random regression model, Genetics Selection Evolution; 1998; 30: 221-240.

Ulutaş, Z. Production Traits Market Values of Welsh Black Cattle., University of Wales Banger; 1998; UK, (PhD. Thesis).

Mısztal, I.D., 1990. Restricted Maximum Likelihood Estimation of Variance Components in Animal model Using Sparse Matrix Inversion and a Supercomputer. J. Dairy Sci., 73:163-172.

Searle, R., A. Variance components-some history and a summary account of estimation methods. J.Anim. Breed. Genet;1989; 106: 1-29.

Kayaalp, G.T., Bek, Y. Varyans Unsurları Tahmin Yöntemlerinin Karşılaştırılmalı olarak İncelenmesi, Çukurova Üniv. Zir. Fak. Derg;1994; 2: 127-142.

Swalve, H., Van Vleck, V.L.D. Estimation of Genetic (Co)variances for milk yield in First Three Lactations Using an Animal Model and Restricted Maximum Likelihood. J.Dairy Science;1987; 70(4):842-849.

Duanajında, M., Mısztal, I.,Bertrant, J.K.,Tsuruta, S. The Emprical Bias of Estimates by Restricted Maximum Likelihood, Bayesian Method, and method R Under Selection for Additive, Maternal, and Dominance Models. J Anim. Sci; 2001; 79:2291-2996.

Orhan, H., Varyans Unsurları Tahmin Yöntemlerinin Monte Carlo Çalışması İle Karşılaştırmalı Olarak İncelenmesi, Yüzüncü Yıl Üniversitesi Fen Bilimleri Enstitüsü Zootekni Anabilim Dalı; 1997; (Doktora Tezi).

Searle, S.R. An Overview of Variance Component Estimation. BU- I 23 I -M. Corncll Univ. Ithaca, N.Y;1994.

Yıldız, N., Akbulut, Ö., Bircan, H. İstatistiğe Giriş (Uygulamalı Temel Bilgiler Çözümlü ve Cevaplı Sorular) Genişletilmiş Üçüncü Baskı, Aktif Yayınevi; 2002;343 s. ERZURUM.

Meyer, K. Estimation of Genetic Parameters. Published as Chapter 23 in Evolution and Animal Breeding; 1989.

Khattre, R. Nonnegative Estimation of Variance Components:A Modification to Henderson’s Anova Methodology. The İndian Journal of Statistics, Series B;1999; 61:261-265.

Ünalan, A., Çankaya, S. Jersey Sığırlarda Süt Verimine Ait Varyans Unsurlarının Farklı Yöntemlerle Tahmini, Anadolu Tarım Bilim. Dergisi; 2012; 27(1):41-47.

Littell, R. C., Milliken, G. A., Stroup, W. W., Wolfinger, R. D., Schabenberger, O. SAS for Mixed Models; 2006; (2nd ed.). SAS Institute.

Sorensen, D., Gianola, D. Likelihood, Bayesian, and MCMC Methods in Quantitative Genetics. Springer-Verlag, New York; 2002; ISBN: 978-0387952546

Searle, S. R., Casella, G., McCulloch, C. E. Variance Components; 1992; Wiley-Interscience.

McCulloch, C. E., & Searle, S. R. Generalized, Linear, and Mixed Models; 2001. Wiley.

Khuri, A. I., Mathew, T., Sinha, B. K., & Arnab, R. Statistical Methods in Mixed Models;2006; Wiley.

Harville D.A. Maximum likelihood approaches to variance component estimation and to related problems. J. Am. Stat. Assoc. 1977;72:320-338.

Laird, N. M., Ware, J. H. Random-effects models for longitudinal data. Biometrics; 1982; 38(4), 963-974.

Pinheiro, J. C., Bates, D. M. Mixed-Effects Models in S and S-PLUS. Springer; 2000.

Faraway, J. J. Extending the Linear Model with R: Generalized Linear, Mixed Effects and Nonparametric Regression Models; 2006; Chapman and Hall/CRC.

Henderson, C. R. 1984. Estimation of variaDces and covariances under multiple traitmodels. J. Dairy Sci;1984; 67: 1581

Groeneveld, E., G., KOVAÇ, M. A Note on Multiple Solutions in Multivarate Restrcted Maximum Likelihood Covariance Component Estimation. J.Dairy Science;1990; 73:2221-2229.

Eler, J.P., Van Vleck, L.D., Ferraz, J.B.S., And Labo, R.B. Estimation of Variances Due to Drect and Maternal Effects for Growth Traits of Nelore Cattle., J.Anim. Sci.;1195; 73:3253-3258.

Dong, M.C., And Van Vleck, L.D. Correlations Among First And Second Lactation Milk Yield And Calving İnterval, J.Dairy. Sci;1989; 72:1933-1936.

Smyth, G.K., Verbyla, A. P. A Conditional Approach To Residual Maximum Likelihood Estimation İn Generalized Linear Models. J. Roy. Statist. Soc. B;1996; 58, 565-572.

Ruckhıng, A.L., Bıggerstoff, B.J., Vongel, M.G. Restricted Maximum Likelihood Estimation of a Common Mean and the Model –Paule Algoritm. Journal of Statistical Planning and İnference;2000; 83:319-330.

Bek, Y., Fırat, M.Z., Cebeci, Z., Pekel, E., 1998. Çiftlik Hayvanlarının Genetik Islahında Bayesian Metodu Kullanarak, Verime Etкi Yapan Unsurların Tahmini Algoritmaları ve Islahı İçin En Uygun Bilgisayar Programının Geliştirilmesi (Proje No: VHAG-1221), Adana.

Särkkä S. 2013. Bayesian filtering and smoothing, Cambridge University Press; 2013; 978-1-107-61928-9.

Meuwissen, T. H., Hayes, B. J., & Goddard, M. E. Prediction of total genetic value using genome-wide dense marker maps. Genetics; 2001; 157(4), 1819-1829.

Dekkers, J. C. M. Prediction of response to marker-assisted and genomic selection using selection index theory.Journal of Animal Breeding and Genetics; 2007; 124(6), 331-341. https://doi.org/10.1111/j.1439-0388.2007.00701.x

VanRaden, P. M. Efficient methods to compute genomic predictions. Journal of Dairy Science; 2008. 91(11), 4414-4423. https://doi.org/10.3168/jds.2007-0980.

Dellal, G., Mert, İ. Zootekni Terimler sözlüğü, Zootekni Federasyonu, Hira Grup Matbaacılık Ltd. Şti; 2013; 1190s.

Mai, Z., Ark., H. Genetic variation and inheritance in population studies. Journal of Genetic Research;2021; 58(4), 245-259. https://doi.org/10.1016/j.jgr.2021.04.007.

Wray, N. R., & Visscher, P. M. Heritability of complex traits: Insights and progress. Nature Reviews Genetics; 2008; 9(2), 132–142. https://doi.org/10.1038/nrg2270.

Vanlı, Y., Özsoy, M.K., Baş, S., Kaygısız, A. Populasyon ve Biyometrik Genetik, Namık Kemal Üniversitesi Ziraat Fakültesi; 2012; Yayın No: 11, 205s.

Şahin, A.Jersey Sığırlarının Süt ve Döl Verim Özelliklerine Ait Varyans Bileşenleri ve Genetik Prametrelerinin Tahmini (Yüksek Lisans Tezi), Gaziosmanpaşa Üniversitesi Fen Bilimleri Enst. Zootekni Anabilim Dalı; 2004; Tokat.

Şahin A., Ulutaş Z., Yılmaz Adkınson A., Adkınson RW.Estimates of phenotypic and genetic parameters for birth weight of Brown Swiss calves in Turkey using an animal model. Tropical Animal Health and Production; 2012; 44(5), 1027-1034., Doi: 10.1007/s11250-011-0036-6 (Yayın No: 1142175.

Güllüce, M. Tokat ilinde yetiştirilen Anadolu mandalarında büyüme özelliklerine ait fenotipik parametreler ve genetik parametre tahminleri, Kırşehir Ahi Evran Üniversitesi, Fen Bilimleri Enstitüsü, Zootekni Anabilim Dalı;2023; Doktora Tezi.

Çoban, Ö.B. Bitlis İlinde Yetiştirilen Anadolu Mandalarında Bazı Verim Özelliklerine Ait Fenotipik Ve Genetik Parametreler, Ankara Üniversitesi, Fen Bilimleri Enstitüsü, Zootekni Anabilim Dalı;2023; Doktora Tezi,

Zafer, U., Şirin, E., Aksoy, Y., Şahin, A., Kuran, M. Estimates of covariance components for direct and maternal effects on birth weight of Karayaka lambs. Tropical Animal Health and Production;2013;45(4), 953-956., Doi: 10.1007/s11250-012-0314-y (Yayın No: 1138145).

Dalton, D. C. Animal Breeding. Longman Scientific & Technical; 2000.

Gilmour, A.R., Gogel, D.J., Cullis, B.R., Thompson, R. ASReml User Guide Release 2.0. VSN International Ltd., Hemel Hempstead, HP1 1ES, U;2006; p.342.

Meyer, K. DFREML-a set of programs to estimate variance components under an individual animal model. J. Dairy Sci.; 1988; 71(Suppl. 2):33-34.

Boldman, K. G., Kriese, L. A. Van Vleck, L. D. Van Tassell, C. P., and Kachman. S. D. A manual for use of MTDFREML, a set of programs to obtain estimates of variances and covariances. USDA, ARS, Washington, DC;1995.

Meyer, K. WOMBAT-A tool for mixed model analyses in quantitative genetics by restricted maximum likelihood (REML). Journal of Zhejiang University Science B, 8(11), 815-821. https://doi.org/10.1631/jzus.2007.B0815

Kumlu, S. Hayvan Islahı. Türkiye Damızlık Sığır Yetiştiricileri Birliği Yayinları;1999; No:1. 198s, Ankara.

Badu-Apraku, B., Akinwale, R. O., Aderounmu, M., & Oyekunle, M. Genetic progress and repeatability of yield and Striga resistance traits in early-maturing maize hybrids. PLOS ONE;2025; 20(4), e0319353. https://doi.org/10.1371/journal.pone.0319353

Almasi, F., Stear, M. J., Khansefid, M., Nguyen, H., Desai, A., & Pryce, J. E. The repeatability and heritability of traits derived from accelerometer sensors associated with grazing and rumination time in an extensive sheep farming system. Frontiers in Animal Science, 4, Article 1154797; 2023; https://doi.org/10.3389/fanim.2023.1154797.

Balasundaram, B., Muralidharan, J., Murali, N., Cauveri, D., Raja, A., & Okpeku, M. Development of selection strategies for genetic improvement in production traits of Mecheri sheep based on a Bayesian multi-trait evaluation. PLOS ONE;2023; 18(12), e0289460. https://doi.org/10.1371/journal.pone.0289460PLOS.

Şahin, A. Tarım İşletmeleri Genel Müdürlüğüne Bağlı İşletmelerde Yetiştirilen Farklı Sığır Irklarının Süt ve Döl Verim Özelliklerine Ait Genotipik ve Fenotipik Parametre Tahmini (Doktora Tezi), Gaziosmanpaşa Üniversitesi Fen Bilimleri Enst. Zootekni Anabilim Dalı; 2009; Tokat.

Kumlu, S. Hayvan Islahı. Türkiye Damızlık Sığır Yetiştiricileri Merkez Birliği Yayınları, Ankara. 1999.381s.

Ahmad, S. F., & Shah, R. Comparison of various models for the estimation of heritability and breeding values for birth weight in Corriedale sheep. Tropical Animal Health and Production, 55, Article 36; 2023. https://doi.org/10.1007/s11250-023-03665-6

Ahmad, S. F., Khan, N. N., Ganai, N. A., Shanaz, S., Rather, M. A., & Alam, S. Multivariate quantitative genetic analysis of body weight traits in Corriedale sheep. Tropical Animal Health and Production; 2021; 53(1), Article 197.

Kumlu, S. Damızlık ve Kasaplık Sığır Yetiştirme. Türkiye Damızlık Sığır Yetiştiricileri Merkez Birliği Yayınları, Akdeniz Üniversitesi Ziraat Fakültesi Zootekni Bölümü No:3;2000, 166s, Antalya.

Van Arendonk, J.A.M., Hovenıer, R., De Boer, W. Phenotypic and Genetic Association Between Fertility and Production in Dairy Cows. Livestock Production Science; 1989; 2, 11-12.

Moore, R.K., Kennedy, B.W., Schaeffer, L.R., and Moxley, J.E., Relationships Between reproduction Traits, Age and Body Weight at Calving, and Days Dry in First Lactation Ayrshires and Holsteins. J.Dairy Sci.;1990; 73, 835-842.

Makuza, S.M., Mcdanıel, B.T. Effects of Days Dry, Previous Days Open on Milk Yields of Cows in Zimbabve and North Carolina. J.Dairy Sci.; 1196; 79, 702-709.

Özçelik, M., Doğan, İ. Holştayn Irkı İneklerde Süt ve Döl Verimi Özellikleri Arasındaki Genetik ve Fenotipik Korelasyonlar. Tr. J. of Veterinary and Animal Sciences; 1999; 23 (2), 249-255.

Sayfalar

83-144

Yayınlanan

1 Eylül 2025

Lisans

Lisans