Nanopartiküllerin Tıbbi Mikrobiyolojide Kullanımı
Özet
Tıbbi mikrobiyoloji, mikrobiyolojinin mikroorganizmaları ve bunların insan sağlığı üzerindeki etkilerini incelemeye odaklanan ve tıp alanındaki uygulamalarını içeren daldır. Özellikle enfeksiyon hastalıkların önlenmesi, teşhisi ve tedavisi konuları üzerine odaklanmaktadır. İnsan sağlığını tehdit edip hastalığa sebep olan ve tıbbi mikrobiyolojinin alanına giren mikroorganizmalar; bakteriler, mantarlar ve virüslerin neden olduğu bulaşıcı hastalıklar dünya çapında ölümlerin önde gelen nedenidir ve sağlık hizmetleri ve sosyoekonomik kalkınma üzerinde küresel etki yapmaktadır. Bu nedenle yeni tanı ve tedavi stratejilerinin geliştirilmesi gerekmektedir. Son yıllarda nanoteknolojideki gelişmeler ışığında nanoyapıların mikroorganizmalarla etkileşimi tıbbi mikrobiyolojide nanopartikül kullanımı oldukça yaygınlaşmış ve hem teşhis hem de tedavi uygulamalarında avantajlar sunarak biyomedikal alanda hızla devrim yaratmıştır. Tıbbi mikrobiyolojide nanopartiküllerin tanı amacıyla kullanımında çeşitli cihazsal yöntemler kullanılarak da desteklenmesi gerekmektedir. Günümüzde kullanılan nanopartikül tabanlı; antijen tespiti, PCR, immünofluoresans, elektrokimyasal sensörler, antikor ve protein tanı testleri, lateral flow testleri, yüzey kaplama ve mikrofluidik cihazlar, spektroskopik uygulamalar gibi her biri farklı amaçlar için tasarlanmış tanı aracı bulunmaktadır. Bu bölümde nanopartiküllerin yaygın olarak görülen virüs, bakteri ve mantarlar enfeksiyonlarının tanısında kullanılması için yapılan literatüre kazandırılan yeni yaklaşımlara değinilmiştir.
Referanslar
Adegoke, O., Morita, M., Kato, T., Ito, M., Suzuki, T., & Park, E. Y. (2017). Localized surface plasmon resonance-mediated fluorescence signals in plasmonic nanoparticle-quantum dot hybrids for ultrasensitive Zika virus RNA detection via hairpin hybridization assays. Biosensors & Bioelectronics, 94, 513–522. https://doi.org/10.1016/j.bios.2017.03.046
Ageitos, J.M., Sánchez-Pérez, A., Calo-Mata, P., Villa, T.G. (2017). Antimicrobial peptides (AMPs): Ancient compounds that represent novel weapons in the fight against bacteria. Biochemical Pharmacology, 133, 117-138. https://doi.org/10.1016/j.bcp.2016.09.018
Alhogail, S., Suaifan, G. A. R. Y., and Zourob, M. (2016). Rapid colorimetric sensing platform for the detection of Listeria monocytogenes foodborne pathogen. Biosensors and Bioelectronics. 86, 1061–1066. https://doi.org/10.1016/j.bios.2016.07.043
Azie, N., Neofytos, D., Pfaller, M., Meier-Kriesche, H.U., Quan, S.P., Horn, D. (2012). The PATH (Prospective Antifungal Therapy) Alliance® registry and invasive fungal infections: update 2012. Diagnostic Microbiology and Infectious Disease, 73:293–300. http://dx.doi.org/10.1016/j.diagmicrobio.2012.06.012
Bai, Y., Cui, Y., Paoli, G. C., Shi, C., Wang, D., Zhou, M., et al. (2016). Synthesis of amino-rich silica-coated magnetic nanoparticles for the efficient capture of DNA for PCR. Colloids and Surfaces B: Biointerfaces, 145, 257–266. https://doi.org/10.1016/j.colsurfb.2016.05.003
Bao, Y.P., Wei, T.F., Lefebvre, P.A., An, H., He, L., Kunkel, G.T., and Muller, U.R. (2006). Detection of Protein Analytes via Nanoparticle-Based Bio Bar Code Technology. Analytical Chemistry, 78(6): 2055-2059. https://doi.org/10.1021/ac051798d
Barchiesi, F., Orsetti, E., Gesuita, R., Skrami, E., Manso, E., Group, C.S. (2016). Epidemiology, clinical characteristics, and outcome of candidemia in a tertiary referral center in Italy from 2010 to 2014. Infection, 44(2):205–213. https://doi.org/10.1007/s15010-015-0845-z
Bhatnagar, I., Mahato, K., Ealla, K.K.R., Asthana, A., Chandra, P. (2018). Chitosan stabilized gold nanoparticle mediated self-assembled gliP nanobiosensor for diagnosis of invasive aspergillosis. International Journal of Biological Macromolecules, 110, 449–456. https://doi.org/10.1016/j.ijbiomac.2017.08.140
Borsa, B. A., Tuna, B. G., Hernandez, F. J., Hernandez, L. I., Bayramoglu, G., Arica, M. Y., et al. (2016). Staphylococcus aureus detection in blood samples by silica nanoparticle-oligonucleotides conjugates. Biosensors and Bioelectronics. 86, 27–32. https://doi.org/10.1016/j.bios.2016.06.023
Brangel, P., Sobarzo, A., Parolo, C., Miller, B. S., Howes, P. D., Gelkop, S., Lutwama, J. J., Dye, J. M., McKendry, R. A., Lobel, L., & Stevens, M. M. (2018). A serological point-of-care test for the detection of IgG antibodies against Ebola virus in human survivors. ACS Nano, 12(1), 63–73. https://doi.org/10.1021/acsnano.7b07021
Brown, G.D., Denning, D.W., Levitz, S.M. (2012). Tackling human fungal infections. Science, 336:647. http://dx.doi.org/10.1126/science.1222236
Campoccia, D., Montanaro, L., Arciola C.R. (2013). A review of the biomaterials technologies for infection-resistant surfaces. Biomaterials, 34, 8533-8554. https://doi.org/10.1016/j.biomaterials.2013.07.089
Chand, R., & Neethirajan, S. (2017). Microfluidic platform integrated with graphene-gold nano-composite aptasensor for one-step detection of norovirus. Biosensors & Bioelectronics, 98, 47–53. https://doi.org/10.1016/j.bios.2017.06.026
Chen, S., Tang, F., Tang, L., Li, L. (2017). Synthesis of Cu-Nanoparticle Hydrogel with Self-Healing and Photothermal Properties. ACS Applied Materials Interfaces, 9, 20895-20903. https://doi.org/10.1021/acsami.7b04956
Chen, J., Andler, S.M., Goddard, J.M., Nugen, S.R., Rotello, V.M. (2017). Integrating recognition elements with nanomaterials for bacteria sensing. Chemical Society Reviews, 46(5): 1272-1283. https://doi.org/10.1039/c6cs00313c
Chisanga, M., Muhamadali, H., Ellis, D.I., Goodacre, R. (2019). Enhancing disease diagnosis: biomedical applications of surface-enhanced Raman scattering. Applied Sciences, 9(6), 1163. https://doi.org/10.3390/app9061163.
Curry, T., Kopelman, R., Shilo, M., Popovtzer, R. (2014). Multifunctional Theranostic Gold Nanoparticles for Targeted CT Imaging and Photothermal Therapy. Contrast Media & Molecular Imaging, 9, 53– 61. https://doi.org/10.1002/cmmi.1563
Dai, X., Zhao, Y., Yu, Y., Chen, X., Wei, X., Zhang, X., Li, C. (2017). Single Continuous Near-Infrared Laser-Triggered Photodynamic and Photothermal Ablation of Antibiotic-Resistant Bacteria Using Effective Targeted Copper Sulfide Nanoclusters. ACS Applied Materials and Interfaces, 9 (36): 30470-30479. https://doi.org/10.1021/acsami.7b09638
Dal, T. (2023). Tıbbi Mikrobiyoloji. Akademisyen Yayınevi Kitabevi. ISBN:9786253992231, https://doi.org/10.37609/akya.2656
De Pauw, B., Walsh, T.J., Donnelly, J.P., Stevens, D.A., Edwards, J.E., Calandra, T., et al. (2008). Revised definitions of invasive fungal disease from the European organiza- tion for research and treatment of cancer/invasive fungal infections coop- erative group and the national Institute of allergy and infectious diseases mycoses study group (EORTC/MSG) C. Clinical Infectious Diseases, 46(12): 1813-1821. https://doi.org/10.1086/588660.
Dagenais, T.R., Keller, N.P. (2009). Pathogenesis of Aspergillus fumigatus in invasive aspergillosis. Clinical Microbiology Reviews, 22:447–465. http://dx.doi.org/10.1128/CMR.00055-08 37
Ding, X., Yuan, P., Gao, N., Zhu, H., Yang, Y., Xu, Q.H. (2017). Au-Ag core-shell nanoparticles for simultaneous bacterial imaging and synergistic antibacterial activity, Nanomedicine,13, 297-305. https://doi.org/10.1016/j.nano.2016.09.003
Dizaj, S.M., Lotfipour, F., Barzegar-Jalali, M., Zarrintan, M.H., Adibkia, K. (2014). Antimicrobial activity of the metals and metal oxide nanoparticles. Materials Science Engineering C, 44, 278-284. https://doi.org/10.1016/j.msec.2014.08.031
Dodemont, M., Mendonca, R.D., Nonhoff, C., Roisin, S. and Denis, O. (2014). Performance of the Verigene Gram-Negative Blood Culture Assay for Rapid Detection of Bacteria and Resistance Determinants. Journal of Clinical Microbiology, 52(8):3085-3087. https://doi.org/10.1128/JCM.01099-14
Duval, R.E., Grare, M., Demore, B., (2019). Fight against Antimicrobial Resistance: We Always Need New Antibacterials but for Right Bacteria. Molecules, 24, 3152. https://doi.org/10.3390/molecules24173152
Elewski, B.E. (1998). Onychomycosis: pathogenesis, diagnosis, and management. Clinical Microbiology Reviews,11(3):415–29. https://doi.org/10.1128/cmr.11.3.415.
Echavarria, M., Robinson, CRTA. (2015). Taxonomy and classification of fungi. In: Manual of clinical microbiology. 11th ed. Washington DC: ASM Press; p. 1935-1943.
Ekinci, M. ve Özdemir, D.İ. (2021). Nanoteranostikler, Ankara Ecz. Fak. Derg. / J. Fac. Pharm. Ankara, 45(1): 131-155. https://doi.org/10.33483/jfpau.717067
Fraire, J.C., Perez, L.A., Coronado, E.A.(2012). Rational Design of Plasmonic Nanostructures for Biomolecular Detection: Interplay between Theory and Experiments. ACS Nano, 6: 3441– 3452. https://doi.org/10.1021/nn300474p
Fargašová, A., Balzerová, A., Prucek, R., Sedláková, M. H., Bogdanová, K., Gallo, J., et al. (2017). Detection of prosthetic joint infection based on magnetically assisted surface enhanced raman spectroscopy. Analytical Chemistry, 89, 6598–6607. https://doi.org/10.1021/acs.analchem.7b00759
Fredrickson, J., Zachara, J., Balkwill, D. et. al. (2004). Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the Hanford site, Washington state. Applied and Environmental Microbiology, 70 (7): 4230-4241. https://doi.org/10.1128/AEM.70.7.4230-4241.2004.
Giljohann, D.A., Seferos, D.S., Daniel, D.L., Massich, M.D., Patel, P.C. and Mirkin, C.A. (2010). Gold Nanoparticles for Biology and Medicine. Angewandte Chemie International Edition, 49, 3280-3294. https://doi.org/10.1002/anie.200904359
Güneri, C.Ö. (2023). Tıbbi Mikrobiyoloji. Bakterilerin tanımlanmasında kullanılan geleneksel yöntemler ve prosedürler (s. 155-175). Akademisyen Yayınevi Kitabevi. ISBN:9786253992231, https://doi.org/10.37609/akya.2656
Haleem, A., Javaid, M., Singh, R.P., Rab, S., Suman, R. (2023). Applications of nanotechnology in medical field: a brief review. Global Health Journal, 7(2): 70-77. https://doi.org/10.1016/j.glohj.2023.02.008
Hajipour, M.J., Fromm, K.M., Akbar Ashkarran, A., Jimenez de Aberasturi, D., Larramendi, I.R., Rojo, T., Serpooshan, V., Parak, W.J., Mahmoudi, M. (2012) Antibacterial properties of nanoparticles. Trends Biotechnology, 30, 499-511. https://doi.org/10.1016/j.tibtech.2012.06.004
Han, H.W., Hsu, M.M.L., Choi, J.S., Hsu, C.K., Hsieh, H.Y., Li, H.C., Chang, H.C., Chang, T.C. (2014). Rapid detection of dermatophytes and Candida albicans in onychomycosis specimens by an oligonucleotide array. BMC Infectious Diseases, 14(1):1. https://doi.org/10.1186/s12879-014-0581-5
Hao, L., Gu, H., Duan, N., Wu, S., Ma, X., Xia, Y., et al. (2017). A chemiluminescent aptasensor based on rolling circle amplification and Co2+/N-(aminobut3r1)-N-(ethylisolumino1) functional flowerlike gold nanoparticles for Salmonella typhimurium detection. Talanta 164, 275–282. https://doi.org/10.1016/j.talanta.2016.11.053
Hasan, N., Guo, Z., and Wu, H. F. (2016). Large protein analysis of Staphylococcus aureus and Escherichia coli by MALDI TOF mass spectrometry using amoxicillin functionalized magnetic nanoparticles. Analytical and Bioanalytical Chemistry. 408, 6269–6281. https://doi.org/10.1007/s00216-016-9730-6
Hashem, A.H., Al-Askar, A.A., Haponiuk, J., Abd-Elsalam, K.A., Hasanin, M.S. (2023). Biosynthesis, Characterization, and Antifungal Activity of Novel Trimetallic Copper Oxide-Selenium-Zinc Oxide Nanoparticles against Some Mucorales Fungi. Microorganisms, 11(6):1380. http://dx.doi.org/10.3390/microorganisms11061380
Hawksworth, D.L. and Lücking, R. (2017). Fungal diversity revisited: 2.2 to 3.8 million species. Microbiology Spectrum, 5(4),15. https://doi.org/10.1128/microbiolspec.FUNK-0052-2016
He, Y., Wang, M., Fan, E., Ouyang, H., Yue, H., Su, X., et al. (2017). Highly specific bacteriophage-affinity strategy for rapid separation and sensitive detection of viable pseudomonas aeruginosa. Analytical Chemistry, 89, 1916–1921. https://doi.org/10.1021/acs.analchem.6b04389
Hoerr, V., Tuchscherr, L., Hüve, J., Nippe, N., Loser, K., Glyvuk, N., et al. (2013). Bacteria tracking by in vivo magnetic resonance imaging. BMC Biology, 11:63. https://doi.org/10.1186/1741-7007-11-63
Houhoula, D., Papaparaskevas, J., Zatsou, K., Nikolaras, N., Malkawi, H. I., Mingeot-Leclercq, M. sP., et al. (2017). Magnetic nanoparticle-enhanced PCR for the detection and identification of Staphylococcus aureus and Salmonella enteritidis. Nature Microbiology. 40, 165–169. ISN 1121-7138.
Huang, P., Wang, H., Cao, Z., Jin, H., Chi, H., Zhao, J., Yu, B., Yan, F., Hu, X., Wu, F., Jiao, C., Hou, P., Xu, S., Zhao, Y.,Feng, N., Wang, J., Sun, W., Wang, T., Gao, Y., Yang, S., Xia, X. (2018). A Rapid and Specific Assay for the Detection of MERS-CoV. Frontiers in Microbiology. 9:1101. http://dx.doi.org/10.3389/fmicb.2018.01101
Hu, S., Kang, H., Gu, F., Wang, C., Cheng, S., Gong, W., Wang, L., Gu, B., Yang, Y., (2021). Rapid detection method for pathogenic Candida captured by magnetic nanoparticles and identified using SERS via AgNPs+. International Journal of Nanomedicine, 16:941e50. https://doi.org/10.2147/IJN.S285339.
Hu, J., Jiang, Y.Z., Wu, L.L., Wu, Z., Bi, Y., Wong, G., Qiu, X., Chen, J., Pang, D. W., & Zhang, Z.L. (2017). Dual-signal readout nanospheres for rapid point-of-care detection of Ebola virus glycoprotein. Analytical Chemistry, 89(24), 13105–13111. https://doi.org/10.1021/acs.analchem.7b02222
Hu, Y., Huang, Y., Wang, Y., Li, C., Wong, W., Ye, X., & Sun, D. (2018). A photoelectrochemical immunosensor based on gold nanoparticles/ZnAgInS quaternary quantum dots for the high-performance determination of hepatitis B virus surface antigen. Analytica Chimica Acta, 1035, 136–145. https://doi.org/10.1016/j.aca.2018.06.019
Ibelli, T., Templeton, S., and Levi-Polyachenko, N. (2018). Progress on utilizing hyperthermia for mitigating bacterial infections. . International Journal of Hyperthermia, 34, 144–156. https://doi.org/10.1080/02656736.2017.1369173
Ishige, T., Honda, K., Shimizu, S. (2005). Whole organism biocatalysis. Current Opinion in Chemical Biology, 9 (2): 174-180. https://doi.org/10.1016/j.cbpa.2005.02.001
Jang, H., Hwang, E. Y., Kim, Y., Choo, J., Jeong, J., and Lim, D. W. (2016). Surface-enhanced raman scattering and fluorescence-based dual nanoprobes for multiplexed detection of bacterial pathogens. Journal of Biomedical Nanotechnology. 12, 1938–1951. https://doi.org/10.1166/jbn.2016.2309
Jung, Y.L., Jung, C., Parab, H., Li, T., Park, H.G. (2010). Direct Colorimetric Diagnosis of Pathogen Infections by Utilizing Thiol-Labeled PCR Primers and Unmodified Gold Nanoparticles. Biosensors and Bioelectronics, 25, 1941– 1946, https://doi.org/10.1016/j.bios.2010.01.010
Kell, A.J., Stewart, G., Ryan, S., Peytavi, R., Boissinot, M., Huletsky, A., et al. (2008). Vancomycin-modified nanoparticles for efficient targeting and preconcentration of Gram-positive and Gram-negative bacteria. Acs Nano, 2: 1777–1788. https://doi.org/10.1021/nn700183g
Kim, M.H., Yamayoshi, I., Mathew, S., Lin, H., Nayfach, J., and Simon, S.I. (2013). Magnetic nanoparticle targeted hyperthermia of cutaneous Staphylococcus aureus infection. Annals of Biomedical Engineering, 41, 598–609. https://doi.org/10.1007/s10439-012-0698-x
Kim, S. U., Jo, E. J., Mun, H., Noh, Y., and Kim, M. G. (2018). Ultrasensitive detection of escherichia coli o157:h7 by immunomagnetic separation and selective filtration with nitroblue tetrazolium/5-bromo-4- chloro-3-indolyl phosphate signal amplification. Journal of Agricultural and Food Chemistry, 66: 4941–4947. https://doi.org/10.1021/acs.jafc.8b00973
Kim, Y.T., Kim, K.H., Kang, E.S., Jo, G., Ahn, S.Y., Park, S.H., et al. (2016). Synergistic effect of detection and separation for pathogen using magnetic clusters. Bioconjugate Chemistry, 27, 59–65. https://doi.org/10.1021/acs.bioconjchem.5b00681
Kim, E.Y., Stanton, J., Korber, B.T. Krebs, K., Bogdan, D., Kunstman, K., Wu, S., Phair, J.P., Mirkin, C.A., Wolinsky, S.M. (2008). Detection of HIV-1 p24 Gag in plasma by a nanoparticle-based bio-barcode-amplification method. Nanomedicine, 3: 293-303. https://doi.org/10.2217/17435889.3.3.293
Kim, H., Park, M., Hwang, J., Kim, J.H., Chung, D.R., Lee, K.S. Kang, M. (2019). Development of Label Free Colorimetric Assay for MERS-CoV Using Gold Nanoparticles. ACS Sensor, 4, 1306– 1312, https://doi.org/10.1021/acssensors.9b00175
Kitching, M., Ramani, M., Marsili, E. (2015). Fungal biosynthesis of gold nanoparticles: mechanism and scale up. Microbial Biotechnology, 8(6): 904–917. https://doi.org/10.1111/1751-7915.12151.
Konopka, J.B., Casadevall, A., Taylor, J.W., Heitman, J., Cowen, L.(2019). One health: fungal pathogens of humans, animals and plants. American Academy of Microbiology Colloquia Reports. p. 1e3, Bookshelf ID: NBK549988. https://doi.org/10.1128/AAMCol.18Oct.2017
Köhler, J.R., Hube, B., Puccia, R., Casadevall, A., Perfect, J.R. (2017). Fungi that infect humans. Microbiology Spectrum, 5(3). https://doi.org/10.1128/microbiolspec.FUNK-0014-2016
Kuang, H., Cui, G., Chen, X., Yin, H., Yong, Q., Xu, L., et al. (2013). A one- step homogeneous sandwich immunosensor for Salmonella detection based on magnetic nanoparticles (MNPs) and quantum dots (QDs). International Journal of Molecular Sciences, 14, 8603–8610. https://doi.org/10.3390/ijms14048603
Kwon, D., Joo, J., Lee, J., Park, K. H., and Jeon, S. (2013). Magnetophoretic chromatography for the detection of pathogenic bacteria with the naked eye. Analytical Chemistry, 85, 7594–7598. https://doi.org/10.1021/ac401717f
Lau, I.P.M., Ngan, E.K., Loo, J.F., Suen, Y.K., Ho, H.P., Kong, S.K. (2010). Aptamer-based bio-barcode assay for the detection of cytochrome-c released from apoptotic cells. Biochemical and Biophysical Research Communication, 395(4): 560-564. https://doi.org/10.1016/j.bbrc.2010.04.066.
Li, Y., Zhang, W., Niu, J., Chen, Y. (2012). Mechanism of photogenerated reactive oxygen species and correlation with the antibacterial properties of engineered metal-oxide nanoparticles. ACS Nano, 6(6): 5164-5173. https://doi.org/10.1021/nn300934k
Li, Z., Yi, Y., Luo, X., Xiong, N., Liu, Y., Li, S., Sun, R., Wang, Y., Hu, B., Chen, W., Zhang, Y., Wang, J., Huang, B., Lin, Y., Yang, J., Cai, W., Wang, X., Cheng, J., Chen, Z., … Ye, F. (2020). Development and clinical application of a rapid IgM-IgG combined antibody test for SARS-CoV-2 infection diagnosis. Journal of Medical Virology, 92(9), 1518–1524. https://doi.org/10.1002/jmv.25727
Li, H., Li, C., Martin, F. L., and Zhang, D. (2017). Diagnose pathogens in drinking water via magnetic surface-enhanced raman scattering (SERS) assay. Materials Today: Proceedings, 4: 25–31. https://doi.org/10.1016/j.matpr.2017.01.189
Li, H., Rothberg, L. (2004). Colorimetric Detection of DNA Sequences Based on Electrostatic Interactions with Unmodified Gold Nanoparticles. Proceedings of the National Academy of Sciences of the United States of America, 101, 14036– 14039. https://doi.org/10.1073/pnas.040611510
Lionakis, M.S. and Netea, M.G. (2013). Candida and Host Determinants of Susceptibility to Invasive Candidiasis. PLoS Pathogenes, 9(1): e1003079. https://doi.org/10.1371/journal.ppat.1003079
Loo, J.F., Lau, P.M., Ho, H.P., Kong, S.K. (2013). An aptamer-based bio-barcode assay with isothermal recombinase polymerase amplification for cytochrome-c detection and anti-cancer drug screening. Talanta, 15(1): 159-165. https://doi.org/10.1016/j.talanta.2013.04.051
Martins, J.F.S., Castilho, M.L., Cardoso, M.A.G., Carreiro, A.P., Martin, A.A., Raniero, L. (2012). Identification of paracoccidioides brasiliensis by gold nanoprobes. In Proceedings of the Biomedical Vibrational Spectroscopy V: Advances in Research and Industry, San Francisco, CA, USA, 31 January 2012.
Meng, X., Li, F., Li, F., Xiong, Y., and Xu, H. (2017). Vancomycin modified PEGylated-magnetic nanoparticles combined with PCR for efficient enrichment and detection of Listeria monocytogenes. Sensors and Actuators B: Chemical, 247: 546–555. https://doi.org/10.1016/j.snb.2017.03.079
Mestas, J., Polanco, C.M., Felsenstein, S., Dien Bard, J. (2014). Performance of the Verigene Gram-Positive Blood Culture Assay for Direct Detection of Gram-Positive Organisms and Resistance Markers in a Pediatric Hospital. Journal of Clinical Microbiology, 52(1): 283-287. https://doi.org/10.1128/JCM.02322-13
Misra, S.K., Dighe, K., Schwartz-Duval, A.S., Shang, Z., Labriola, L.T., Pan, D. (2018). In Situ Plasmonic Generation in Functional Ionic-Gold-Nanogel Scaffold for Rapid Quantitative Bio-Sensing. Biosensors and Bioelectronics, 120, 77– 84, https://doi.org/10.1016/j.bios.2018.08.019
Moitra, P., Alafeef, M., Alafeef, Dighe, K., Frieman, M.B., Pan, D. (2020). Selective naked-eye detection of SARS-CoV-2 mediated by N gene targeted antisense oligonucle-otide capped plasmonic nanoparticles. ACS Nano, 14: 7617–7627. https://doi.org/10.1021/acsnano.0c03822
Naja, G., Hrapovic, S., Male, K., Bouvrette, P., Luong, J.H.T. (2008). Rapid detection of microorganisms with nanoparticles and electron microscopy. Microscopy Research and Technique, 71, 742–748. https://doi.org/10.1002/jemt.20614
Nam, J.M., Thaxton, C.S. and Mirkin, C.A. (2003). Nanoparticle-Based Bio-Bar Codes for the Ultrasensitive Detection of Proteins. Science, 301(5641): 1884-1886. https://doi.org/10.1126/science.1088755
Nam, J.M., Jang, K.J. and Groves, J.T. (2007). Detection of proteins using a colorimetric bio-barcode assay. Natural Protocols, 2, 1438-1444. https://doi.org/10.1126/10.1038/nprot.2007.201
Nam, J.M., Wise, A.R. & Groves, J.T. (2005). Colorimetric bio-barcode amplification assay for cytokines. Analytical Chemistry, 77, 6985–6988. https://doi.org/10.1021/ac0513764
Nasimi, P. and Haidari, M. (2013). Medical Use of Nanoparticles: Drug Delivery and Diagnosis Diseases. International Journal of Green Nanotechnology, 1:1-5. https://doi.org/10.1177/1943089213506978
Nasrin, F., Chowdhury, A. D., Takemura, K., Kozaki, I., Honda, H., Adegoke, O., & Park, E. Y. (2020). Fluorometric virus detection platform using quantum dots-gold nanocomposites optimizing the linker length variation. Analytica Chimica Acta, 1109, 148–157. https://doi.org/10.1016/j.aca.2020.02.039
Neely, L.A., Audeh, M., Phung, N.A., Min, M., Suchocki, A., Plourde, D., Blanco, M., Demas, V., Skewis, L.R., Anagnostou, T., et al. (2013). T2 magnetic resonance enables nanoparticle-mediated rapid detection of candidemia in whole blood. Science Translational Medicine, 5(182): 182ra54. https://doi.org/10.1126/scitranslmed.3005377
Niemeyer, C.M., Adler, M. and Wacker, R. (2005). Immuno-PCR: high sensitivity detection of proteins by nucleic acid amplification. Trends Biotechnology, 23(4): 208-216. https://doi.org/10.1016/j.tibtech.2005.02.006
Oh, S., Kim, J., Tran, V. T., Lee, D. K., Ahmed, S. R., Hong, J. C., Lee, J., Park, E. Y., & Lee, J. (2018). Magnetic nanozyme-linked immunosorbent assay for ultrasensitive influenza a virus detection. ACS Applied Materials & Interfaces, 10(15), 12534–12543. https://doi.org/10.1021/acsnano.5b00240
Pan, D., Schirra, C.O., Wickline, S.A., Lanza, G.M. (2014). Multicolor Computed Tomographic Molecular Imaging with Noncrystalline High-Metal-Density Nanobeacons. Contrast Media Molecular Imaging, 9: 13-25. https://doi.org/10.1002/cmmi.1571(a)
Pan, D., Pramanik, M., Senpan, A., Yang, X., Song, K.H., Scott, M. J., Zhang, H., Gaffney, P.J., Wickline, S.A.,Wang, L.V., Lanza, G.M.(2009). Molecular Photo Acoustic Imaging (PAI) with Ligand-Directed Gold Nanobeacons. Angewandte Chemie International Edition, 48, 4170– 4173. https://doi.org/10.1002/anie.200805947(b)
Pan, D., Pramanik, M., Senpan, A., Ghosh, S., Wickline, S.A., Wang, L.V., Lanza, G.M. (2010). Near Infrared Photoacoustic Detection of Sentinel Lymphnodes with Gold Nanobeacons. Biomaterials, 31: 4088– 4093. https://doi.org/10.1016/j.biomaterials.2010.01.136(c)
Pan, D., Pramanik, M., Senpan, A., Wickline, S.A., Wang, L.V., Lanza, G.M. (2010). A Facile Synthesis of Novel Self-Assembled Gold Nanorods Designed for Near-Infrared Imaging. Journal of Nanoscience and Nanotechnology, 10, 8118– 8123, https://doi.org/10.1166/jnn.2010.3034(d)
Park, C., Lee, J., Kim, Y., Kim, J., Lee, J., and Park, S. (2017). 3D-printed microfluidic magnetic preconcentrator for the detection of bacterial pathogen using an ATP luminometer and antibody-conjugated magnetic nanoparticles. Journal of Microbiological Methods,132, 128–133. https://doi.org/10.1016/j.mimet.2016.12.001
Pei, F., Wang, P., Ma, E., Yang, Q., Yu, H., Gao, C., Li, Y., Liu, Q., & Dong, Y. (2019). A sandwich-type electrochemical immunosensor based on RhPt NDs/NH2-GS and Au NPs/PPy NS for quantitative detection hepatitis B surface antigen. Bioelectrochemistry, 126, 92–98. https://doi.org/10.1016/j.bioelechem.2018.11.008
Peng, L., Li, B.L., Zhou, C.W., Li, N.B., Setyawati, M.I., Zou, H.L.(2018). Naked-Eye Recognition: Emerging Gold Nano-Family for Visual Sensing. Applied Materials Today, 11, 166– 188, https://doi.org/10.1016/j.apmt.2018.02.007
Penesyan, A., Gillings, M., Paulsen, I.T. (2015). Antibiotic discovery: Combatting bacterial resistance in cells and in biofilm communities. Molecules,20, 5286–5298. https://doi.org/10.3390/molecules20045286
Peter Donnelly, J., Chen, S.C., Kauffman, C.A., Steinbach, W.J., Baddley, J.W., Verweij, P.E., et al. (2020). Revision and update of the consensus definitions of invasive fungal disease from the european organization for research and treatment of cancer and the mycoses study group education and research consortium. Clinical Infectious Diseases, 71(6):1367-1376. https://doi.org/10.1093/cid/ciz1008.
Pfaller, M.A., Diekema, D.J. (2010). Epidemiology of invasive mycoses in North America. Critical Reviews in Microbiology, 36:1–53. http://dx.doi.org/10.3109/10408410903241444
Pickering JW, Sant HW, Bowles CA, Roberts WL, Woods GL. (2005). Evaluation of a (1→3)-β-D-glucan assay for diagnosis of invasive fungal infections. Journal of Clinical Microbiology, 43(12): 5957–62. https://doi.org/10.1128/jcm.43.12.5957-5962.2005
Raghupathi, K.R., Koodali, R.T., Manna, A.C. (2011). Size-dependent bacterial growth inhibition and mechanism of antibacterial activity of zinc oxide nanoparticles. Langmuir, 27(7): 4020-4028. https://doi.org/10.1021/la104825u
Rappé, M.S., Giovannoni, S.J. (2003). The uncultured microbial majority. Annual Review of Microbiology, 57: 369- 394. https://doi.org/10.1146/annurev.micro.57.030502.090759
Rigby, S., Procop, G.W., Haase, G., Wilson, D., Hall, G., Kurtzman, C., Oliveira, K., Von Oy, S., Hyldig-Nielsen, J.J., Coull, J., et al. (2002). Fluorescence in situ hybridization with peptide nucleic acid probes for rapid identification of Candida albicans directly from blood culture bottles. Journal of Clinical Microbiology, 40, 2182–2186. https://doi.org/10.1128/JCM.40.6.2182-2186.2002
Qiu, G., Gai, Z., Tao, Y., Schmitt, J., Kullak-Ublick, G. A., & Wang, J. (2020). Dual functional plasmonic photothermal biosensors for highly accurate severe acute respiratory syndrome coronavirus 2 detection. ACS Nano, 14(5), 5268–5277. https://doi.org/10.1021/acsnano.0c02439
Sears, C.L. (2005). A dynamic partnership: celebrating our gut flora. Anaerobe. 11 (5):247-251. https://doi.org/10.1016/j.anaerobe.2005.05.00
Shim, W.B., Song, J.E., Mun, H., Chung, D.H., and Kim, M.G. (2014). Rapid colorimetric detection of Salmonella typhimurium using a selective filtration technique combined with antibody-magnetic nanoparticle nanocomposites. Analytical and Bioanalytical Chemistry, 406, 859–866. https://doi.org/10.1007/s00216-013-7497-6
Shokri, E., Hosseini, M., Davari, M.D., Ganjali, M.R., Peppelenbosch, M. P., Rezaee, F.(2017). Disulfide-Induced Self-Assembled Targets. A Novel Strategy for the Label Free Colorimetric Detection of DNAs/RNAs via Unmodified Gold Nanoparticles. Scientific Reports, 7, 1 https://doi.org/10.1038/srep45837
Simon-Deckers, A., Loo, S., Mayne-L’hermite, M., Herlin-Boime, N., Menguy, N., Reynaud, C., Gouget, B., Carrière, M. (2009). Size, composition and shape-dependent toxicological impact of metal oxide nanoparticles and carbon nanotubes toward bacteria. Environmental Science and Technology. 43(21): 8423-8429. https://doi.org/10.1021/es9016975
Sojinrin, T., Conde, J., Liu, K., Curtin, J., Byrne, H.J., Cui, D., Tian, F. (2017). Plasmonic gold for detection of fungi and human cutaneous fungal infections. Analytical and Bioanalytical Chemistry, 409(19):4647-4658. https://doi.org/10.1007/s00216-017-0414-7.
Spengler, M., Adler, M., Niemeyer, C.M. (2015). Highly sensitive ligand-binding assays in pre-clinical and clinical applications: Immuno-PCR and other emerging techniques. Analyst, 140:6175–6194. http://dx.doi.org/10.1039/C5AN00822K.
Stajich, J.E., Kahmann, R., Boone, C., Denning, D.W., Gow, N.A.R., Klein, B.S., et al. (2020). Threats posed by the fungal kingdom to humans, Wildlife, and Agriculture. mBio,11(3):e00449-20. https://doi.org/10.1128/mBio.00449-20.
Steinmetz, M., Lima, D., Viana, A. G., Fujiwara, S. T., Pessoa, C. A., Etto, R. M., & Wohnrath, K. (2019). A sensitive label-free impedimetric DNA biosensor based on silsesquioxane-functionalized gold nanoparticles for Zika virus detection. Biosensors & Bioelectronics, 141, 111351. https://doi.org/10.1016/j.bios.2019.111351
Takemura, K., Adegoke, O., Takahashi, N., Kato, T., Li, T. C., Kitamoto, N., Tanaka, T., Suzuki, T., & Park, E. Y. (2017). Versatility of a localized surface plasmon resonance-based gold nanoparticle-alloyed quantum dot nanobiosensor for immunofluorescence detection of viruses. Biosensors & Bioelectronics, 89(Pt 2), 998–1005. https://doi.org/10.1016/j.bios.2016.10.045
Tang, Y., Zou, J., Ma, C., Ali, Z., Li, Z., Li, X., et al. (2013). Highly sensitive and rapid detection of Pseudomonas aeruginosa based on magnetic enrichment and magnetic separation. Theranostics, 3:85–92. https://doi.org/10.7150/thno.5588
Tang, S., Zhao, J., Storhoff, J.J., Norris, P.J., Little, R.F., Yarchoan, R., Stramer, S.L., Patno, T., Domanus, M., Dhar, A., Mirkin, C.A., Hewlett, I.K. (2007). Nanoparticle-Based Biobarcode Amplification Assay (BCA) for Sensitive and Early Detection of Human Immunodeficiency Type 1 Capsid (p24) Antigen. Journal of Acquired Immune Deficiency Syndromes, 46: 231-237. https://doi.org/10.1097/QAI.0b013e31814a554b
Tang, Y., Wang, H., Xiang, J., Chen, Y., He, W., Deng, N. and Yang, H. (2010). A sensitive immunosorbent bio-barcode assay combining PCR with icELISA for detection of gonyautoxin 2/3. Analytica Chimica Acta, 657: 210-214. https://doi.org/10.1016/j.aca.2009.10.045
Thaxton, C.S., Elghanian, R., Thomas, A.D., Stoeva, S.I., Lee, C.S., Smith, N.D., Schaeffer, A.C., Klocker, H., Horninger, W., Bartsch, G., Mirkin, C.A. (2009). Nanoparticle-based bio-barcode assay redefines“undetectable” PSA and biochemical recurrence after radical prostatectomy. The Proceedings of the National Academy of Sciences (PNAS), 106: 18437-18442. https://doi.org/10.1073/pnas.0904719106
Wang, J., Drelich, A.J., Hopkins, C.M., Mecozzi, S., Li, L., Kwon, G., Hong, S. (2022). Gold nanoparticles in virus detection: Recent advances and potential considerations for SARS-CoV-2 testing development. Wiley Interdisciplinary Reviews-Nanomedicine and Nanobiotechnology, 14(1): e1754. https://doi.org/10.1002/wnan.1754
Wang, C., Gu, B., Liu, Q., Pang, Y., Xiao, R., and Wang, S. (2018). Combined use of vancomycin-modified Ag-coated magnetic nanoparticles and secondary enhanced nanoparticles for rapid surface-enhanced Raman scattering detection of bacteria. International Journal of Nanomedicine. 13, 1159–1178. https://doi.org/10.2147/ijn.s150336
Whitman, W., Coleman, D., Wiebe, W. (1998). Prokaryotes: the unseen majority. Proceedings of the National Academy of Sciences of the United States of America, 95 (12): 6578-6583. https://doi.org/10.1073/pnas.95.12.6578.
Villamizar, R.A., Maroto, A., Rius, F.X. (2009). Improved detection of Candida albicans with carbon nanotube field-effect transistors. Sensors and Actuators B: Chemical, 136, 451–457. https://doi.org/10.1016/j.snb.2008.10.013
Yang, X., Zhou, X., Zhu, M., and Xing, D. (2017). Sensitive detection of Listeria monocytogenes based on highly efficient enrichment with vancomycin- conjugated brush-like magnetic nano-platforms. Biosensors and Bioelectronics. 91, 238–245. https://doi.org/10.1016/j.bios.2016.11.044
Yin, H.Q., Jia, M.X., Yang, S., Wang S.Q. and Zhang, Z.G. (2012). A nanoparticle-based bio-barcode assay for ultrasensitive detection of ricin toxin. Toxicon, 59:12-16. https://doi.org/10.1016/j.toxicon.2011.10.003
Yuan, P., Ding, X., Yang, Y.Y., Xu, Q.H. (2018). Metal Nanoparticles for Diagnosis and Therapy of Bacterial Infection. Advanced Healthcare Materials, 1701392, 1-17. https://doi.org/10.1002/adhm.201701392
Yuan, P., Ding, X., Guan, Z., Gao, N., Ma, R., Jiang, X.F., Yang, Y.Y., Xu, Q.H. (2015). Plasmon-Coupled Gold Nanospheres for Two-Photon Imaging and Photoantibacterial Activity. Advanced Healthcare Materials, 4(5): 674-678. https://doi.org/10.1002/adhm.201400524
Xiang, J., Yan, M., Li, H., Liu, T., Lin, C., Huang, S., Shen, C. (2020). Evaluation of Enzyme-Linked Immunoassay and Colloidal Gold-Immunochromatographic Assay Kit for Detection of Novel Coronavirus (SARS-Cov-2) Causing an Outbreak of Pneumonia (COVID-19) MedRxiv. https://doi.org/10.1101/2020.02.27.20028787.
Xiu, Z.M., Zhang, Q.B., Puppala, H.L., Colvin, V.L., Alvarez, P.J.J. (2012). Negligible particle-specific antibacterial activity of silver nanoparticles. Nano Letters, 12, 4271-4275. https://doi.org/10.1021/nl301934w
Xu, J. (2020). Fungal species concepts in the genomics era. Genome, 63(9):459-468. https://doi.org/10.1139/gen-2020-0022.
Xu, C., Akakuru, O.U., Zheng, J., Wu, A. (2019). Applications of Iron Oxide in Bacterial Infection and Co2+/N-(aminobut3r1)-N-(ethylisolumino1) functional flowerlike gold nanoparticles for Salmonella typhimurium detection. Talanta, 164, 275–282. https://doi.org/10.1016/j.talanta.2016.11.053
Xu, S., Ouyang, W., Xie, P., Lin, Y., Qiu, B., Lin, Z., Chen, G., & Guo, L. (2017). Highly uniform gold nanobipyramids for ultrasensitive colorimetric detection of influenza virus. Analytical Chemistry, 89(3), 1617–1623. https://doi.org/10.1021/acs.analchem.6b03711
Xu, C., Akakuru, O.U., Zheng, J., Wu, A. (2019). Applications of Iron Oxide-Based Magnetic Nanoparticles in the Diagnosis and Treatment of Bacterial Infections. Frontiers in Bioengineering and Biotechnology, 7:141. https://doi.org/10.3389/fbioe.2019.00141
Zeng, J., Zhang, Y., Zeng, T., Aleisa, R., Qiu, Z., Chen, Y., Huang, J., Wang, D., Yan, Z., Yin, Y. (2020). Anisotropic Plasmonic Nanostructures for Colorimetric Sensing. Nano Today, 32: 100855. https://doi.org/10.1016/j.nantod.2020.100855
Zhang, H., Zhao, Q., Li, X.F. and Le, X.C. (2007). Ultrasensitive assays for proteins. Analyst, 132(8): 724-737. https://doi.org/10.1039/B704256
Zhang, D. Carr, D.J., Alocilja, E.C., (2009). Fluorescent bio-barcode DNA assay for the detection of Salmonella enterica serovar Enteritidis. Biosensors and Bioelectronics, 24: 1377-1381. https://doi.org/10.1016/j.bios.2008.07.081
Zhang, X., Qi, B., Li Y., Zhang, S. (2009). Amplified electrochemical aptasensor for thrombin based on bio-barcode method. Biosensors and Bioelectronics, 25(1): 259-262. https://doi.org/10.1016/j.bios.2009.06.026
Zheng, K., Setyawati, M.I., Leong, D.T., Xie, J. (2017). Antimicrobial Gold Nanoclusters. ACS Nano, 11, 6904-6910. https://doi.org/10.1021/acsnano.7b02035
Zheng, J., Ji, X., Du, M., Tian, S., & He, Z. (2018). Rational construction of a DNA nanomachine for HIV nucleic acid ultrasensitive sensing. Nanoscale, 10(36), 17206–17211. https://doi.org/10.1039/c8nr05206
Zou, L., & Ling, L. (2018). Ultrasensitive detection of HIV DNA with polymerase chain reaction-dynamic light scattering. Analytical Chemistry, 90(22), 13373–13377. https://doi.org/10.1021/acs.analchem.8b03052
Referanslar
Adegoke, O., Morita, M., Kato, T., Ito, M., Suzuki, T., & Park, E. Y. (2017). Localized surface plasmon resonance-mediated fluorescence signals in plasmonic nanoparticle-quantum dot hybrids for ultrasensitive Zika virus RNA detection via hairpin hybridization assays. Biosensors & Bioelectronics, 94, 513–522. https://doi.org/10.1016/j.bios.2017.03.046
Ageitos, J.M., Sánchez-Pérez, A., Calo-Mata, P., Villa, T.G. (2017). Antimicrobial peptides (AMPs): Ancient compounds that represent novel weapons in the fight against bacteria. Biochemical Pharmacology, 133, 117-138. https://doi.org/10.1016/j.bcp.2016.09.018
Alhogail, S., Suaifan, G. A. R. Y., and Zourob, M. (2016). Rapid colorimetric sensing platform for the detection of Listeria monocytogenes foodborne pathogen. Biosensors and Bioelectronics. 86, 1061–1066. https://doi.org/10.1016/j.bios.2016.07.043
Azie, N., Neofytos, D., Pfaller, M., Meier-Kriesche, H.U., Quan, S.P., Horn, D. (2012). The PATH (Prospective Antifungal Therapy) Alliance® registry and invasive fungal infections: update 2012. Diagnostic Microbiology and Infectious Disease, 73:293–300. http://dx.doi.org/10.1016/j.diagmicrobio.2012.06.012
Bai, Y., Cui, Y., Paoli, G. C., Shi, C., Wang, D., Zhou, M., et al. (2016). Synthesis of amino-rich silica-coated magnetic nanoparticles for the efficient capture of DNA for PCR. Colloids and Surfaces B: Biointerfaces, 145, 257–266. https://doi.org/10.1016/j.colsurfb.2016.05.003
Bao, Y.P., Wei, T.F., Lefebvre, P.A., An, H., He, L., Kunkel, G.T., and Muller, U.R. (2006). Detection of Protein Analytes via Nanoparticle-Based Bio Bar Code Technology. Analytical Chemistry, 78(6): 2055-2059. https://doi.org/10.1021/ac051798d
Barchiesi, F., Orsetti, E., Gesuita, R., Skrami, E., Manso, E., Group, C.S. (2016). Epidemiology, clinical characteristics, and outcome of candidemia in a tertiary referral center in Italy from 2010 to 2014. Infection, 44(2):205–213. https://doi.org/10.1007/s15010-015-0845-z
Bhatnagar, I., Mahato, K., Ealla, K.K.R., Asthana, A., Chandra, P. (2018). Chitosan stabilized gold nanoparticle mediated self-assembled gliP nanobiosensor for diagnosis of invasive aspergillosis. International Journal of Biological Macromolecules, 110, 449–456. https://doi.org/10.1016/j.ijbiomac.2017.08.140
Borsa, B. A., Tuna, B. G., Hernandez, F. J., Hernandez, L. I., Bayramoglu, G., Arica, M. Y., et al. (2016). Staphylococcus aureus detection in blood samples by silica nanoparticle-oligonucleotides conjugates. Biosensors and Bioelectronics. 86, 27–32. https://doi.org/10.1016/j.bios.2016.06.023
Brangel, P., Sobarzo, A., Parolo, C., Miller, B. S., Howes, P. D., Gelkop, S., Lutwama, J. J., Dye, J. M., McKendry, R. A., Lobel, L., & Stevens, M. M. (2018). A serological point-of-care test for the detection of IgG antibodies against Ebola virus in human survivors. ACS Nano, 12(1), 63–73. https://doi.org/10.1021/acsnano.7b07021
Brown, G.D., Denning, D.W., Levitz, S.M. (2012). Tackling human fungal infections. Science, 336:647. http://dx.doi.org/10.1126/science.1222236
Campoccia, D., Montanaro, L., Arciola C.R. (2013). A review of the biomaterials technologies for infection-resistant surfaces. Biomaterials, 34, 8533-8554. https://doi.org/10.1016/j.biomaterials.2013.07.089
Chand, R., & Neethirajan, S. (2017). Microfluidic platform integrated with graphene-gold nano-composite aptasensor for one-step detection of norovirus. Biosensors & Bioelectronics, 98, 47–53. https://doi.org/10.1016/j.bios.2017.06.026
Chen, S., Tang, F., Tang, L., Li, L. (2017). Synthesis of Cu-Nanoparticle Hydrogel with Self-Healing and Photothermal Properties. ACS Applied Materials Interfaces, 9, 20895-20903. https://doi.org/10.1021/acsami.7b04956
Chen, J., Andler, S.M., Goddard, J.M., Nugen, S.R., Rotello, V.M. (2017). Integrating recognition elements with nanomaterials for bacteria sensing. Chemical Society Reviews, 46(5): 1272-1283. https://doi.org/10.1039/c6cs00313c
Chisanga, M., Muhamadali, H., Ellis, D.I., Goodacre, R. (2019). Enhancing disease diagnosis: biomedical applications of surface-enhanced Raman scattering. Applied Sciences, 9(6), 1163. https://doi.org/10.3390/app9061163.
Curry, T., Kopelman, R., Shilo, M., Popovtzer, R. (2014). Multifunctional Theranostic Gold Nanoparticles for Targeted CT Imaging and Photothermal Therapy. Contrast Media & Molecular Imaging, 9, 53– 61. https://doi.org/10.1002/cmmi.1563
Dai, X., Zhao, Y., Yu, Y., Chen, X., Wei, X., Zhang, X., Li, C. (2017). Single Continuous Near-Infrared Laser-Triggered Photodynamic and Photothermal Ablation of Antibiotic-Resistant Bacteria Using Effective Targeted Copper Sulfide Nanoclusters. ACS Applied Materials and Interfaces, 9 (36): 30470-30479. https://doi.org/10.1021/acsami.7b09638
Dal, T. (2023). Tıbbi Mikrobiyoloji. Akademisyen Yayınevi Kitabevi. ISBN:9786253992231, https://doi.org/10.37609/akya.2656
De Pauw, B., Walsh, T.J., Donnelly, J.P., Stevens, D.A., Edwards, J.E., Calandra, T., et al. (2008). Revised definitions of invasive fungal disease from the European organiza- tion for research and treatment of cancer/invasive fungal infections coop- erative group and the national Institute of allergy and infectious diseases mycoses study group (EORTC/MSG) C. Clinical Infectious Diseases, 46(12): 1813-1821. https://doi.org/10.1086/588660.
Dagenais, T.R., Keller, N.P. (2009). Pathogenesis of Aspergillus fumigatus in invasive aspergillosis. Clinical Microbiology Reviews, 22:447–465. http://dx.doi.org/10.1128/CMR.00055-08 37
Ding, X., Yuan, P., Gao, N., Zhu, H., Yang, Y., Xu, Q.H. (2017). Au-Ag core-shell nanoparticles for simultaneous bacterial imaging and synergistic antibacterial activity, Nanomedicine,13, 297-305. https://doi.org/10.1016/j.nano.2016.09.003
Dizaj, S.M., Lotfipour, F., Barzegar-Jalali, M., Zarrintan, M.H., Adibkia, K. (2014). Antimicrobial activity of the metals and metal oxide nanoparticles. Materials Science Engineering C, 44, 278-284. https://doi.org/10.1016/j.msec.2014.08.031
Dodemont, M., Mendonca, R.D., Nonhoff, C., Roisin, S. and Denis, O. (2014). Performance of the Verigene Gram-Negative Blood Culture Assay for Rapid Detection of Bacteria and Resistance Determinants. Journal of Clinical Microbiology, 52(8):3085-3087. https://doi.org/10.1128/JCM.01099-14
Duval, R.E., Grare, M., Demore, B., (2019). Fight against Antimicrobial Resistance: We Always Need New Antibacterials but for Right Bacteria. Molecules, 24, 3152. https://doi.org/10.3390/molecules24173152
Elewski, B.E. (1998). Onychomycosis: pathogenesis, diagnosis, and management. Clinical Microbiology Reviews,11(3):415–29. https://doi.org/10.1128/cmr.11.3.415.
Echavarria, M., Robinson, CRTA. (2015). Taxonomy and classification of fungi. In: Manual of clinical microbiology. 11th ed. Washington DC: ASM Press; p. 1935-1943.
Ekinci, M. ve Özdemir, D.İ. (2021). Nanoteranostikler, Ankara Ecz. Fak. Derg. / J. Fac. Pharm. Ankara, 45(1): 131-155. https://doi.org/10.33483/jfpau.717067
Fraire, J.C., Perez, L.A., Coronado, E.A.(2012). Rational Design of Plasmonic Nanostructures for Biomolecular Detection: Interplay between Theory and Experiments. ACS Nano, 6: 3441– 3452. https://doi.org/10.1021/nn300474p
Fargašová, A., Balzerová, A., Prucek, R., Sedláková, M. H., Bogdanová, K., Gallo, J., et al. (2017). Detection of prosthetic joint infection based on magnetically assisted surface enhanced raman spectroscopy. Analytical Chemistry, 89, 6598–6607. https://doi.org/10.1021/acs.analchem.7b00759
Fredrickson, J., Zachara, J., Balkwill, D. et. al. (2004). Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the Hanford site, Washington state. Applied and Environmental Microbiology, 70 (7): 4230-4241. https://doi.org/10.1128/AEM.70.7.4230-4241.2004.
Giljohann, D.A., Seferos, D.S., Daniel, D.L., Massich, M.D., Patel, P.C. and Mirkin, C.A. (2010). Gold Nanoparticles for Biology and Medicine. Angewandte Chemie International Edition, 49, 3280-3294. https://doi.org/10.1002/anie.200904359
Güneri, C.Ö. (2023). Tıbbi Mikrobiyoloji. Bakterilerin tanımlanmasında kullanılan geleneksel yöntemler ve prosedürler (s. 155-175). Akademisyen Yayınevi Kitabevi. ISBN:9786253992231, https://doi.org/10.37609/akya.2656
Haleem, A., Javaid, M., Singh, R.P., Rab, S., Suman, R. (2023). Applications of nanotechnology in medical field: a brief review. Global Health Journal, 7(2): 70-77. https://doi.org/10.1016/j.glohj.2023.02.008
Hajipour, M.J., Fromm, K.M., Akbar Ashkarran, A., Jimenez de Aberasturi, D., Larramendi, I.R., Rojo, T., Serpooshan, V., Parak, W.J., Mahmoudi, M. (2012) Antibacterial properties of nanoparticles. Trends Biotechnology, 30, 499-511. https://doi.org/10.1016/j.tibtech.2012.06.004
Han, H.W., Hsu, M.M.L., Choi, J.S., Hsu, C.K., Hsieh, H.Y., Li, H.C., Chang, H.C., Chang, T.C. (2014). Rapid detection of dermatophytes and Candida albicans in onychomycosis specimens by an oligonucleotide array. BMC Infectious Diseases, 14(1):1. https://doi.org/10.1186/s12879-014-0581-5
Hao, L., Gu, H., Duan, N., Wu, S., Ma, X., Xia, Y., et al. (2017). A chemiluminescent aptasensor based on rolling circle amplification and Co2+/N-(aminobut3r1)-N-(ethylisolumino1) functional flowerlike gold nanoparticles for Salmonella typhimurium detection. Talanta 164, 275–282. https://doi.org/10.1016/j.talanta.2016.11.053
Hasan, N., Guo, Z., and Wu, H. F. (2016). Large protein analysis of Staphylococcus aureus and Escherichia coli by MALDI TOF mass spectrometry using amoxicillin functionalized magnetic nanoparticles. Analytical and Bioanalytical Chemistry. 408, 6269–6281. https://doi.org/10.1007/s00216-016-9730-6
Hashem, A.H., Al-Askar, A.A., Haponiuk, J., Abd-Elsalam, K.A., Hasanin, M.S. (2023). Biosynthesis, Characterization, and Antifungal Activity of Novel Trimetallic Copper Oxide-Selenium-Zinc Oxide Nanoparticles against Some Mucorales Fungi. Microorganisms, 11(6):1380. http://dx.doi.org/10.3390/microorganisms11061380
Hawksworth, D.L. and Lücking, R. (2017). Fungal diversity revisited: 2.2 to 3.8 million species. Microbiology Spectrum, 5(4),15. https://doi.org/10.1128/microbiolspec.FUNK-0052-2016
He, Y., Wang, M., Fan, E., Ouyang, H., Yue, H., Su, X., et al. (2017). Highly specific bacteriophage-affinity strategy for rapid separation and sensitive detection of viable pseudomonas aeruginosa. Analytical Chemistry, 89, 1916–1921. https://doi.org/10.1021/acs.analchem.6b04389
Hoerr, V., Tuchscherr, L., Hüve, J., Nippe, N., Loser, K., Glyvuk, N., et al. (2013). Bacteria tracking by in vivo magnetic resonance imaging. BMC Biology, 11:63. https://doi.org/10.1186/1741-7007-11-63
Houhoula, D., Papaparaskevas, J., Zatsou, K., Nikolaras, N., Malkawi, H. I., Mingeot-Leclercq, M. sP., et al. (2017). Magnetic nanoparticle-enhanced PCR for the detection and identification of Staphylococcus aureus and Salmonella enteritidis. Nature Microbiology. 40, 165–169. ISN 1121-7138.
Huang, P., Wang, H., Cao, Z., Jin, H., Chi, H., Zhao, J., Yu, B., Yan, F., Hu, X., Wu, F., Jiao, C., Hou, P., Xu, S., Zhao, Y.,Feng, N., Wang, J., Sun, W., Wang, T., Gao, Y., Yang, S., Xia, X. (2018). A Rapid and Specific Assay for the Detection of MERS-CoV. Frontiers in Microbiology. 9:1101. http://dx.doi.org/10.3389/fmicb.2018.01101
Hu, S., Kang, H., Gu, F., Wang, C., Cheng, S., Gong, W., Wang, L., Gu, B., Yang, Y., (2021). Rapid detection method for pathogenic Candida captured by magnetic nanoparticles and identified using SERS via AgNPs+. International Journal of Nanomedicine, 16:941e50. https://doi.org/10.2147/IJN.S285339.
Hu, J., Jiang, Y.Z., Wu, L.L., Wu, Z., Bi, Y., Wong, G., Qiu, X., Chen, J., Pang, D. W., & Zhang, Z.L. (2017). Dual-signal readout nanospheres for rapid point-of-care detection of Ebola virus glycoprotein. Analytical Chemistry, 89(24), 13105–13111. https://doi.org/10.1021/acs.analchem.7b02222
Hu, Y., Huang, Y., Wang, Y., Li, C., Wong, W., Ye, X., & Sun, D. (2018). A photoelectrochemical immunosensor based on gold nanoparticles/ZnAgInS quaternary quantum dots for the high-performance determination of hepatitis B virus surface antigen. Analytica Chimica Acta, 1035, 136–145. https://doi.org/10.1016/j.aca.2018.06.019
Ibelli, T., Templeton, S., and Levi-Polyachenko, N. (2018). Progress on utilizing hyperthermia for mitigating bacterial infections. . International Journal of Hyperthermia, 34, 144–156. https://doi.org/10.1080/02656736.2017.1369173
Ishige, T., Honda, K., Shimizu, S. (2005). Whole organism biocatalysis. Current Opinion in Chemical Biology, 9 (2): 174-180. https://doi.org/10.1016/j.cbpa.2005.02.001
Jang, H., Hwang, E. Y., Kim, Y., Choo, J., Jeong, J., and Lim, D. W. (2016). Surface-enhanced raman scattering and fluorescence-based dual nanoprobes for multiplexed detection of bacterial pathogens. Journal of Biomedical Nanotechnology. 12, 1938–1951. https://doi.org/10.1166/jbn.2016.2309
Jung, Y.L., Jung, C., Parab, H., Li, T., Park, H.G. (2010). Direct Colorimetric Diagnosis of Pathogen Infections by Utilizing Thiol-Labeled PCR Primers and Unmodified Gold Nanoparticles. Biosensors and Bioelectronics, 25, 1941– 1946, https://doi.org/10.1016/j.bios.2010.01.010
Kell, A.J., Stewart, G., Ryan, S., Peytavi, R., Boissinot, M., Huletsky, A., et al. (2008). Vancomycin-modified nanoparticles for efficient targeting and preconcentration of Gram-positive and Gram-negative bacteria. Acs Nano, 2: 1777–1788. https://doi.org/10.1021/nn700183g
Kim, M.H., Yamayoshi, I., Mathew, S., Lin, H., Nayfach, J., and Simon, S.I. (2013). Magnetic nanoparticle targeted hyperthermia of cutaneous Staphylococcus aureus infection. Annals of Biomedical Engineering, 41, 598–609. https://doi.org/10.1007/s10439-012-0698-x
Kim, S. U., Jo, E. J., Mun, H., Noh, Y., and Kim, M. G. (2018). Ultrasensitive detection of escherichia coli o157:h7 by immunomagnetic separation and selective filtration with nitroblue tetrazolium/5-bromo-4- chloro-3-indolyl phosphate signal amplification. Journal of Agricultural and Food Chemistry, 66: 4941–4947. https://doi.org/10.1021/acs.jafc.8b00973
Kim, Y.T., Kim, K.H., Kang, E.S., Jo, G., Ahn, S.Y., Park, S.H., et al. (2016). Synergistic effect of detection and separation for pathogen using magnetic clusters. Bioconjugate Chemistry, 27, 59–65. https://doi.org/10.1021/acs.bioconjchem.5b00681
Kim, E.Y., Stanton, J., Korber, B.T. Krebs, K., Bogdan, D., Kunstman, K., Wu, S., Phair, J.P., Mirkin, C.A., Wolinsky, S.M. (2008). Detection of HIV-1 p24 Gag in plasma by a nanoparticle-based bio-barcode-amplification method. Nanomedicine, 3: 293-303. https://doi.org/10.2217/17435889.3.3.293
Kim, H., Park, M., Hwang, J., Kim, J.H., Chung, D.R., Lee, K.S. Kang, M. (2019). Development of Label Free Colorimetric Assay for MERS-CoV Using Gold Nanoparticles. ACS Sensor, 4, 1306– 1312, https://doi.org/10.1021/acssensors.9b00175
Kitching, M., Ramani, M., Marsili, E. (2015). Fungal biosynthesis of gold nanoparticles: mechanism and scale up. Microbial Biotechnology, 8(6): 904–917. https://doi.org/10.1111/1751-7915.12151.
Konopka, J.B., Casadevall, A., Taylor, J.W., Heitman, J., Cowen, L.(2019). One health: fungal pathogens of humans, animals and plants. American Academy of Microbiology Colloquia Reports. p. 1e3, Bookshelf ID: NBK549988. https://doi.org/10.1128/AAMCol.18Oct.2017
Köhler, J.R., Hube, B., Puccia, R., Casadevall, A., Perfect, J.R. (2017). Fungi that infect humans. Microbiology Spectrum, 5(3). https://doi.org/10.1128/microbiolspec.FUNK-0014-2016
Kuang, H., Cui, G., Chen, X., Yin, H., Yong, Q., Xu, L., et al. (2013). A one- step homogeneous sandwich immunosensor for Salmonella detection based on magnetic nanoparticles (MNPs) and quantum dots (QDs). International Journal of Molecular Sciences, 14, 8603–8610. https://doi.org/10.3390/ijms14048603
Kwon, D., Joo, J., Lee, J., Park, K. H., and Jeon, S. (2013). Magnetophoretic chromatography for the detection of pathogenic bacteria with the naked eye. Analytical Chemistry, 85, 7594–7598. https://doi.org/10.1021/ac401717f
Lau, I.P.M., Ngan, E.K., Loo, J.F., Suen, Y.K., Ho, H.P., Kong, S.K. (2010). Aptamer-based bio-barcode assay for the detection of cytochrome-c released from apoptotic cells. Biochemical and Biophysical Research Communication, 395(4): 560-564. https://doi.org/10.1016/j.bbrc.2010.04.066.
Li, Y., Zhang, W., Niu, J., Chen, Y. (2012). Mechanism of photogenerated reactive oxygen species and correlation with the antibacterial properties of engineered metal-oxide nanoparticles. ACS Nano, 6(6): 5164-5173. https://doi.org/10.1021/nn300934k
Li, Z., Yi, Y., Luo, X., Xiong, N., Liu, Y., Li, S., Sun, R., Wang, Y., Hu, B., Chen, W., Zhang, Y., Wang, J., Huang, B., Lin, Y., Yang, J., Cai, W., Wang, X., Cheng, J., Chen, Z., … Ye, F. (2020). Development and clinical application of a rapid IgM-IgG combined antibody test for SARS-CoV-2 infection diagnosis. Journal of Medical Virology, 92(9), 1518–1524. https://doi.org/10.1002/jmv.25727
Li, H., Li, C., Martin, F. L., and Zhang, D. (2017). Diagnose pathogens in drinking water via magnetic surface-enhanced raman scattering (SERS) assay. Materials Today: Proceedings, 4: 25–31. https://doi.org/10.1016/j.matpr.2017.01.189
Li, H., Rothberg, L. (2004). Colorimetric Detection of DNA Sequences Based on Electrostatic Interactions with Unmodified Gold Nanoparticles. Proceedings of the National Academy of Sciences of the United States of America, 101, 14036– 14039. https://doi.org/10.1073/pnas.040611510
Lionakis, M.S. and Netea, M.G. (2013). Candida and Host Determinants of Susceptibility to Invasive Candidiasis. PLoS Pathogenes, 9(1): e1003079. https://doi.org/10.1371/journal.ppat.1003079
Loo, J.F., Lau, P.M., Ho, H.P., Kong, S.K. (2013). An aptamer-based bio-barcode assay with isothermal recombinase polymerase amplification for cytochrome-c detection and anti-cancer drug screening. Talanta, 15(1): 159-165. https://doi.org/10.1016/j.talanta.2013.04.051
Martins, J.F.S., Castilho, M.L., Cardoso, M.A.G., Carreiro, A.P., Martin, A.A., Raniero, L. (2012). Identification of paracoccidioides brasiliensis by gold nanoprobes. In Proceedings of the Biomedical Vibrational Spectroscopy V: Advances in Research and Industry, San Francisco, CA, USA, 31 January 2012.
Meng, X., Li, F., Li, F., Xiong, Y., and Xu, H. (2017). Vancomycin modified PEGylated-magnetic nanoparticles combined with PCR for efficient enrichment and detection of Listeria monocytogenes. Sensors and Actuators B: Chemical, 247: 546–555. https://doi.org/10.1016/j.snb.2017.03.079
Mestas, J., Polanco, C.M., Felsenstein, S., Dien Bard, J. (2014). Performance of the Verigene Gram-Positive Blood Culture Assay for Direct Detection of Gram-Positive Organisms and Resistance Markers in a Pediatric Hospital. Journal of Clinical Microbiology, 52(1): 283-287. https://doi.org/10.1128/JCM.02322-13
Misra, S.K., Dighe, K., Schwartz-Duval, A.S., Shang, Z., Labriola, L.T., Pan, D. (2018). In Situ Plasmonic Generation in Functional Ionic-Gold-Nanogel Scaffold for Rapid Quantitative Bio-Sensing. Biosensors and Bioelectronics, 120, 77– 84, https://doi.org/10.1016/j.bios.2018.08.019
Moitra, P., Alafeef, M., Alafeef, Dighe, K., Frieman, M.B., Pan, D. (2020). Selective naked-eye detection of SARS-CoV-2 mediated by N gene targeted antisense oligonucle-otide capped plasmonic nanoparticles. ACS Nano, 14: 7617–7627. https://doi.org/10.1021/acsnano.0c03822
Naja, G., Hrapovic, S., Male, K., Bouvrette, P., Luong, J.H.T. (2008). Rapid detection of microorganisms with nanoparticles and electron microscopy. Microscopy Research and Technique, 71, 742–748. https://doi.org/10.1002/jemt.20614
Nam, J.M., Thaxton, C.S. and Mirkin, C.A. (2003). Nanoparticle-Based Bio-Bar Codes for the Ultrasensitive Detection of Proteins. Science, 301(5641): 1884-1886. https://doi.org/10.1126/science.1088755
Nam, J.M., Jang, K.J. and Groves, J.T. (2007). Detection of proteins using a colorimetric bio-barcode assay. Natural Protocols, 2, 1438-1444. https://doi.org/10.1126/10.1038/nprot.2007.201
Nam, J.M., Wise, A.R. & Groves, J.T. (2005). Colorimetric bio-barcode amplification assay for cytokines. Analytical Chemistry, 77, 6985–6988. https://doi.org/10.1021/ac0513764
Nasimi, P. and Haidari, M. (2013). Medical Use of Nanoparticles: Drug Delivery and Diagnosis Diseases. International Journal of Green Nanotechnology, 1:1-5. https://doi.org/10.1177/1943089213506978
Nasrin, F., Chowdhury, A. D., Takemura, K., Kozaki, I., Honda, H., Adegoke, O., & Park, E. Y. (2020). Fluorometric virus detection platform using quantum dots-gold nanocomposites optimizing the linker length variation. Analytica Chimica Acta, 1109, 148–157. https://doi.org/10.1016/j.aca.2020.02.039
Neely, L.A., Audeh, M., Phung, N.A., Min, M., Suchocki, A., Plourde, D., Blanco, M., Demas, V., Skewis, L.R., Anagnostou, T., et al. (2013). T2 magnetic resonance enables nanoparticle-mediated rapid detection of candidemia in whole blood. Science Translational Medicine, 5(182): 182ra54. https://doi.org/10.1126/scitranslmed.3005377
Niemeyer, C.M., Adler, M. and Wacker, R. (2005). Immuno-PCR: high sensitivity detection of proteins by nucleic acid amplification. Trends Biotechnology, 23(4): 208-216. https://doi.org/10.1016/j.tibtech.2005.02.006
Oh, S., Kim, J., Tran, V. T., Lee, D. K., Ahmed, S. R., Hong, J. C., Lee, J., Park, E. Y., & Lee, J. (2018). Magnetic nanozyme-linked immunosorbent assay for ultrasensitive influenza a virus detection. ACS Applied Materials & Interfaces, 10(15), 12534–12543. https://doi.org/10.1021/acsnano.5b00240
Pan, D., Schirra, C.O., Wickline, S.A., Lanza, G.M. (2014). Multicolor Computed Tomographic Molecular Imaging with Noncrystalline High-Metal-Density Nanobeacons. Contrast Media Molecular Imaging, 9: 13-25. https://doi.org/10.1002/cmmi.1571(a)
Pan, D., Pramanik, M., Senpan, A., Yang, X., Song, K.H., Scott, M. J., Zhang, H., Gaffney, P.J., Wickline, S.A.,Wang, L.V., Lanza, G.M.(2009). Molecular Photo Acoustic Imaging (PAI) with Ligand-Directed Gold Nanobeacons. Angewandte Chemie International Edition, 48, 4170– 4173. https://doi.org/10.1002/anie.200805947(b)
Pan, D., Pramanik, M., Senpan, A., Ghosh, S., Wickline, S.A., Wang, L.V., Lanza, G.M. (2010). Near Infrared Photoacoustic Detection of Sentinel Lymphnodes with Gold Nanobeacons. Biomaterials, 31: 4088– 4093. https://doi.org/10.1016/j.biomaterials.2010.01.136(c)
Pan, D., Pramanik, M., Senpan, A., Wickline, S.A., Wang, L.V., Lanza, G.M. (2010). A Facile Synthesis of Novel Self-Assembled Gold Nanorods Designed for Near-Infrared Imaging. Journal of Nanoscience and Nanotechnology, 10, 8118– 8123, https://doi.org/10.1166/jnn.2010.3034(d)
Park, C., Lee, J., Kim, Y., Kim, J., Lee, J., and Park, S. (2017). 3D-printed microfluidic magnetic preconcentrator for the detection of bacterial pathogen using an ATP luminometer and antibody-conjugated magnetic nanoparticles. Journal of Microbiological Methods,132, 128–133. https://doi.org/10.1016/j.mimet.2016.12.001
Pei, F., Wang, P., Ma, E., Yang, Q., Yu, H., Gao, C., Li, Y., Liu, Q., & Dong, Y. (2019). A sandwich-type electrochemical immunosensor based on RhPt NDs/NH2-GS and Au NPs/PPy NS for quantitative detection hepatitis B surface antigen. Bioelectrochemistry, 126, 92–98. https://doi.org/10.1016/j.bioelechem.2018.11.008
Peng, L., Li, B.L., Zhou, C.W., Li, N.B., Setyawati, M.I., Zou, H.L.(2018). Naked-Eye Recognition: Emerging Gold Nano-Family for Visual Sensing. Applied Materials Today, 11, 166– 188, https://doi.org/10.1016/j.apmt.2018.02.007
Penesyan, A., Gillings, M., Paulsen, I.T. (2015). Antibiotic discovery: Combatting bacterial resistance in cells and in biofilm communities. Molecules,20, 5286–5298. https://doi.org/10.3390/molecules20045286
Peter Donnelly, J., Chen, S.C., Kauffman, C.A., Steinbach, W.J., Baddley, J.W., Verweij, P.E., et al. (2020). Revision and update of the consensus definitions of invasive fungal disease from the european organization for research and treatment of cancer and the mycoses study group education and research consortium. Clinical Infectious Diseases, 71(6):1367-1376. https://doi.org/10.1093/cid/ciz1008.
Pfaller, M.A., Diekema, D.J. (2010). Epidemiology of invasive mycoses in North America. Critical Reviews in Microbiology, 36:1–53. http://dx.doi.org/10.3109/10408410903241444
Pickering JW, Sant HW, Bowles CA, Roberts WL, Woods GL. (2005). Evaluation of a (1→3)-β-D-glucan assay for diagnosis of invasive fungal infections. Journal of Clinical Microbiology, 43(12): 5957–62. https://doi.org/10.1128/jcm.43.12.5957-5962.2005
Raghupathi, K.R., Koodali, R.T., Manna, A.C. (2011). Size-dependent bacterial growth inhibition and mechanism of antibacterial activity of zinc oxide nanoparticles. Langmuir, 27(7): 4020-4028. https://doi.org/10.1021/la104825u
Rappé, M.S., Giovannoni, S.J. (2003). The uncultured microbial majority. Annual Review of Microbiology, 57: 369- 394. https://doi.org/10.1146/annurev.micro.57.030502.090759
Rigby, S., Procop, G.W., Haase, G., Wilson, D., Hall, G., Kurtzman, C., Oliveira, K., Von Oy, S., Hyldig-Nielsen, J.J., Coull, J., et al. (2002). Fluorescence in situ hybridization with peptide nucleic acid probes for rapid identification of Candida albicans directly from blood culture bottles. Journal of Clinical Microbiology, 40, 2182–2186. https://doi.org/10.1128/JCM.40.6.2182-2186.2002
Qiu, G., Gai, Z., Tao, Y., Schmitt, J., Kullak-Ublick, G. A., & Wang, J. (2020). Dual functional plasmonic photothermal biosensors for highly accurate severe acute respiratory syndrome coronavirus 2 detection. ACS Nano, 14(5), 5268–5277. https://doi.org/10.1021/acsnano.0c02439
Sears, C.L. (2005). A dynamic partnership: celebrating our gut flora. Anaerobe. 11 (5):247-251. https://doi.org/10.1016/j.anaerobe.2005.05.00
Shim, W.B., Song, J.E., Mun, H., Chung, D.H., and Kim, M.G. (2014). Rapid colorimetric detection of Salmonella typhimurium using a selective filtration technique combined with antibody-magnetic nanoparticle nanocomposites. Analytical and Bioanalytical Chemistry, 406, 859–866. https://doi.org/10.1007/s00216-013-7497-6
Shokri, E., Hosseini, M., Davari, M.D., Ganjali, M.R., Peppelenbosch, M. P., Rezaee, F.(2017). Disulfide-Induced Self-Assembled Targets. A Novel Strategy for the Label Free Colorimetric Detection of DNAs/RNAs via Unmodified Gold Nanoparticles. Scientific Reports, 7, 1 https://doi.org/10.1038/srep45837
Simon-Deckers, A., Loo, S., Mayne-L’hermite, M., Herlin-Boime, N., Menguy, N., Reynaud, C., Gouget, B., Carrière, M. (2009). Size, composition and shape-dependent toxicological impact of metal oxide nanoparticles and carbon nanotubes toward bacteria. Environmental Science and Technology. 43(21): 8423-8429. https://doi.org/10.1021/es9016975
Sojinrin, T., Conde, J., Liu, K., Curtin, J., Byrne, H.J., Cui, D., Tian, F. (2017). Plasmonic gold for detection of fungi and human cutaneous fungal infections. Analytical and Bioanalytical Chemistry, 409(19):4647-4658. https://doi.org/10.1007/s00216-017-0414-7.
Spengler, M., Adler, M., Niemeyer, C.M. (2015). Highly sensitive ligand-binding assays in pre-clinical and clinical applications: Immuno-PCR and other emerging techniques. Analyst, 140:6175–6194. http://dx.doi.org/10.1039/C5AN00822K.
Stajich, J.E., Kahmann, R., Boone, C., Denning, D.W., Gow, N.A.R., Klein, B.S., et al. (2020). Threats posed by the fungal kingdom to humans, Wildlife, and Agriculture. mBio,11(3):e00449-20. https://doi.org/10.1128/mBio.00449-20.
Steinmetz, M., Lima, D., Viana, A. G., Fujiwara, S. T., Pessoa, C. A., Etto, R. M., & Wohnrath, K. (2019). A sensitive label-free impedimetric DNA biosensor based on silsesquioxane-functionalized gold nanoparticles for Zika virus detection. Biosensors & Bioelectronics, 141, 111351. https://doi.org/10.1016/j.bios.2019.111351
Takemura, K., Adegoke, O., Takahashi, N., Kato, T., Li, T. C., Kitamoto, N., Tanaka, T., Suzuki, T., & Park, E. Y. (2017). Versatility of a localized surface plasmon resonance-based gold nanoparticle-alloyed quantum dot nanobiosensor for immunofluorescence detection of viruses. Biosensors & Bioelectronics, 89(Pt 2), 998–1005. https://doi.org/10.1016/j.bios.2016.10.045
Tang, Y., Zou, J., Ma, C., Ali, Z., Li, Z., Li, X., et al. (2013). Highly sensitive and rapid detection of Pseudomonas aeruginosa based on magnetic enrichment and magnetic separation. Theranostics, 3:85–92. https://doi.org/10.7150/thno.5588
Tang, S., Zhao, J., Storhoff, J.J., Norris, P.J., Little, R.F., Yarchoan, R., Stramer, S.L., Patno, T., Domanus, M., Dhar, A., Mirkin, C.A., Hewlett, I.K. (2007). Nanoparticle-Based Biobarcode Amplification Assay (BCA) for Sensitive and Early Detection of Human Immunodeficiency Type 1 Capsid (p24) Antigen. Journal of Acquired Immune Deficiency Syndromes, 46: 231-237. https://doi.org/10.1097/QAI.0b013e31814a554b
Tang, Y., Wang, H., Xiang, J., Chen, Y., He, W., Deng, N. and Yang, H. (2010). A sensitive immunosorbent bio-barcode assay combining PCR with icELISA for detection of gonyautoxin 2/3. Analytica Chimica Acta, 657: 210-214. https://doi.org/10.1016/j.aca.2009.10.045
Thaxton, C.S., Elghanian, R., Thomas, A.D., Stoeva, S.I., Lee, C.S., Smith, N.D., Schaeffer, A.C., Klocker, H., Horninger, W., Bartsch, G., Mirkin, C.A. (2009). Nanoparticle-based bio-barcode assay redefines“undetectable” PSA and biochemical recurrence after radical prostatectomy. The Proceedings of the National Academy of Sciences (PNAS), 106: 18437-18442. https://doi.org/10.1073/pnas.0904719106
Wang, J., Drelich, A.J., Hopkins, C.M., Mecozzi, S., Li, L., Kwon, G., Hong, S. (2022). Gold nanoparticles in virus detection: Recent advances and potential considerations for SARS-CoV-2 testing development. Wiley Interdisciplinary Reviews-Nanomedicine and Nanobiotechnology, 14(1): e1754. https://doi.org/10.1002/wnan.1754
Wang, C., Gu, B., Liu, Q., Pang, Y., Xiao, R., and Wang, S. (2018). Combined use of vancomycin-modified Ag-coated magnetic nanoparticles and secondary enhanced nanoparticles for rapid surface-enhanced Raman scattering detection of bacteria. International Journal of Nanomedicine. 13, 1159–1178. https://doi.org/10.2147/ijn.s150336
Whitman, W., Coleman, D., Wiebe, W. (1998). Prokaryotes: the unseen majority. Proceedings of the National Academy of Sciences of the United States of America, 95 (12): 6578-6583. https://doi.org/10.1073/pnas.95.12.6578.
Villamizar, R.A., Maroto, A., Rius, F.X. (2009). Improved detection of Candida albicans with carbon nanotube field-effect transistors. Sensors and Actuators B: Chemical, 136, 451–457. https://doi.org/10.1016/j.snb.2008.10.013
Yang, X., Zhou, X., Zhu, M., and Xing, D. (2017). Sensitive detection of Listeria monocytogenes based on highly efficient enrichment with vancomycin- conjugated brush-like magnetic nano-platforms. Biosensors and Bioelectronics. 91, 238–245. https://doi.org/10.1016/j.bios.2016.11.044
Yin, H.Q., Jia, M.X., Yang, S., Wang S.Q. and Zhang, Z.G. (2012). A nanoparticle-based bio-barcode assay for ultrasensitive detection of ricin toxin. Toxicon, 59:12-16. https://doi.org/10.1016/j.toxicon.2011.10.003
Yuan, P., Ding, X., Yang, Y.Y., Xu, Q.H. (2018). Metal Nanoparticles for Diagnosis and Therapy of Bacterial Infection. Advanced Healthcare Materials, 1701392, 1-17. https://doi.org/10.1002/adhm.201701392
Yuan, P., Ding, X., Guan, Z., Gao, N., Ma, R., Jiang, X.F., Yang, Y.Y., Xu, Q.H. (2015). Plasmon-Coupled Gold Nanospheres for Two-Photon Imaging and Photoantibacterial Activity. Advanced Healthcare Materials, 4(5): 674-678. https://doi.org/10.1002/adhm.201400524
Xiang, J., Yan, M., Li, H., Liu, T., Lin, C., Huang, S., Shen, C. (2020). Evaluation of Enzyme-Linked Immunoassay and Colloidal Gold-Immunochromatographic Assay Kit for Detection of Novel Coronavirus (SARS-Cov-2) Causing an Outbreak of Pneumonia (COVID-19) MedRxiv. https://doi.org/10.1101/2020.02.27.20028787.
Xiu, Z.M., Zhang, Q.B., Puppala, H.L., Colvin, V.L., Alvarez, P.J.J. (2012). Negligible particle-specific antibacterial activity of silver nanoparticles. Nano Letters, 12, 4271-4275. https://doi.org/10.1021/nl301934w
Xu, J. (2020). Fungal species concepts in the genomics era. Genome, 63(9):459-468. https://doi.org/10.1139/gen-2020-0022.
Xu, C., Akakuru, O.U., Zheng, J., Wu, A. (2019). Applications of Iron Oxide in Bacterial Infection and Co2+/N-(aminobut3r1)-N-(ethylisolumino1) functional flowerlike gold nanoparticles for Salmonella typhimurium detection. Talanta, 164, 275–282. https://doi.org/10.1016/j.talanta.2016.11.053
Xu, S., Ouyang, W., Xie, P., Lin, Y., Qiu, B., Lin, Z., Chen, G., & Guo, L. (2017). Highly uniform gold nanobipyramids for ultrasensitive colorimetric detection of influenza virus. Analytical Chemistry, 89(3), 1617–1623. https://doi.org/10.1021/acs.analchem.6b03711
Xu, C., Akakuru, O.U., Zheng, J., Wu, A. (2019). Applications of Iron Oxide-Based Magnetic Nanoparticles in the Diagnosis and Treatment of Bacterial Infections. Frontiers in Bioengineering and Biotechnology, 7:141. https://doi.org/10.3389/fbioe.2019.00141
Zeng, J., Zhang, Y., Zeng, T., Aleisa, R., Qiu, Z., Chen, Y., Huang, J., Wang, D., Yan, Z., Yin, Y. (2020). Anisotropic Plasmonic Nanostructures for Colorimetric Sensing. Nano Today, 32: 100855. https://doi.org/10.1016/j.nantod.2020.100855
Zhang, H., Zhao, Q., Li, X.F. and Le, X.C. (2007). Ultrasensitive assays for proteins. Analyst, 132(8): 724-737. https://doi.org/10.1039/B704256
Zhang, D. Carr, D.J., Alocilja, E.C., (2009). Fluorescent bio-barcode DNA assay for the detection of Salmonella enterica serovar Enteritidis. Biosensors and Bioelectronics, 24: 1377-1381. https://doi.org/10.1016/j.bios.2008.07.081
Zhang, X., Qi, B., Li Y., Zhang, S. (2009). Amplified electrochemical aptasensor for thrombin based on bio-barcode method. Biosensors and Bioelectronics, 25(1): 259-262. https://doi.org/10.1016/j.bios.2009.06.026
Zheng, K., Setyawati, M.I., Leong, D.T., Xie, J. (2017). Antimicrobial Gold Nanoclusters. ACS Nano, 11, 6904-6910. https://doi.org/10.1021/acsnano.7b02035
Zheng, J., Ji, X., Du, M., Tian, S., & He, Z. (2018). Rational construction of a DNA nanomachine for HIV nucleic acid ultrasensitive sensing. Nanoscale, 10(36), 17206–17211. https://doi.org/10.1039/c8nr05206
Zou, L., & Ling, L. (2018). Ultrasensitive detection of HIV DNA with polymerase chain reaction-dynamic light scattering. Analytical Chemistry, 90(22), 13373–13377. https://doi.org/10.1021/acs.analchem.8b03052