Nükleik Asitler

Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R. Young IG (1981) Sequence and organization of the human mitochondrial genome. Nature 290:457-65.

Bannister AJ & Kouzarides T (2011). Regulation of chromatin by histone modifications. Cell research, 21(3), 381-395.

Bell SP & Labib K (2016) Chromosome duplication in Saccharomyces cerevisiae. Genetics, 203(3), 1027-1067.

Bendich AJ (2007) The size and form of chromosomes are constant in the nucleus, but highly variable in bacteria, mitochondria and chloroplasts. BioEssays, 29(5), 474-483.

Bisen PS, Debnath M & Prasad GB (2012) Microbes: concepts and applications. John Wiley & Sons.

Büyükünal-Bal EB, Karataş M (2007) Nükleik Asitler, " Moleküler Biyoloji-Protein Sentezi ve Yıkımı" Editörler, Yıldırım A, Bardakçı F, Karataş M, Tanyolaç B. Nobel Yayın Dağıtım. 55-91.

Campbell AM (1993) Genome organization in prokaryotes. Current Opinion in Genetics & Development, 3(6), 837-844.

Champe P, Harvey RA & Ferrier D (1994) Biochemestry. Lippincott‘s illustrated reviews, 2, 127-129.

Chen Z J & Tian L (2007) Roles of dynamic and reversible histone acetylation in plant development and polyploidy. Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression, 1769(5-6), 295-307.

Chen XJ and Butow RA (2005) The organization and inheritance of the mitochondrial genome. Nature Reviews Genetics, 6(11), 815-825.

Chen Q, Yan M, Cao Z, Li X, Zhang Y, Shi J, et al (2016) Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder. Science. 351, 397–400.

Chinnery PF and Hudson G (2013) Mitochondrial genetics, The British Medical Bulletin, 106 (1), 135–159.

Clausen-Schaumann, H, Rief M, Tolksdorf C.& Gaub HE (2000) Mechanical stability of single DNA molecules. Biophysical journal, 78(4), 1997-2007.

Cooper G & Adams K (2023) The cell: a molecular approach. Oxford University Press.

Çakmak H (2014) Fiziksel Ve Kimyasal Çapraz Bağlı DNA Hidrojellerinin Sentezi ve Karakterizasyonu Fen Bilimleri Enstitüsü.

Condrat CE, Thompson DC, Barbu MG, Bugnar OL, Boboc A, Cretoiu D, Suciu N, Cretoiu SM, Voinea SC (2020) miRNAs as Biomarkers in Disease: Latest Findings Regarding Their Role in Diagnosis and Prognosis. Cells, 9(2)

Dahm R (2005) Friedrich Miescher and the discovery of DNA. Developmental biology, 278(2), 274-288.

Dahm R (2008) Discovering DNA: Friedrich Miescher and the early years of nucleic acid research. Hum Genet 122, 565–581.

Dana H, Chalbatani GM, Mahmoodzadeh H, Karimloo R, Rezaiean O, Moradzadeh A, Mehmandoost N, Moazzen F, Mazraeh A, Marmari V, Ebrahimi M, Rashno MM, Abadi SJ, Gharagouzlo E (2017) Molecular Mechanisms and Biological Functions of siRNA. Int J Biomed Sci, 13, 48-57.

Dinant C, Houtsmuller AB & Vermeulen W (2008) Chromatin structure and DNA damage repair. Epigenetics & chromatin 1(1), 1-13.

Dobrogojski J, Adamiec M & Luciński R (2020). The chloroplast genome: a review. Acta Physiologiae Plantarum, 42, 1-13.

Durbin RM and Landrop M (2010) A map of human genome variation from population scale sequencing. Nature, 467(7319), 1061.

Erler J, Zhang R, Petridis L, Cheng X, Smith JC & Langowski J (2014) The role of histone tails in the nucleosome: a computational study. Biophysical journal, 107(12), 2911-2922.

Fatica A, Bozzoni I (2014) Long non-coding RNAs: new players in cell differentiation and development. Nature Reviews Genetics. 15 (1), 7–21.

Fernández-Silva P, Enriquez JA & Montoya J (2003). Replication and transcription of mammalian mitochondrial DNA. Experimental physiology, 88(1), 41-56.

Fyodorov DV, Zhou BR, Skoultchi AI & Bai Y (2018) Emerging roles of linker histones in regulating chromatin structure and function. Nature reviews Molecular cell biology, 19(3), 192-206.

Galperin MY (2007) Linear chromosomes in bacteria: no straight edge advantage?. Environmental microbiology, 9(6), 1357.

Gavrilov K and Saltzman WM (2012) Therapeutic siRNA: principles, challenges, and strategies. Yale J Biol Med., 85(2), 187-200.

Giles RE, Blanc H, Cann HM and Wallace DC (1980) Maternal inheritance of human mitochondrial DNA. Proceedings of the National academy of Sciences, 77(11), 6715-6719..

Griffith, F. (1928). The significance of pneumococcal types. Epidemiology & Infection, 27(2), 113-159.

Güneş HV (2022) Moleküler Hücre Biyolojisi. İstanbul Tıp Kitabevleri, İstanbul.

Haag JR and Pikaard CS (2011) Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nature reviews Molecular cell biology, 12(8), 483-492.

Haery L, Thompson RC & Gilmore TD (2015) Histone acetyltransferases and histone deacetylases in B-and T-cell development, physiology and malignancy. Genes & cancer, 6(5-6), 184.

Hernandez V (2019) The Hershey-Chase Experiments (1952) by Alfred Hershey and Martha Chase. Embryo Project Encyclopedia.

Hershey AD & Chase M (2017) Independent functions of viral protein and nucleic acid in growth of bacteriophage (pp. 121-139). Springer Berlin Heidelberg.

Hershey AD (2000) We can sleep later:Alfred D. Hershey and the origins of molecular biology. CHSL Press.

Hinnebusch J & Tilly K (1993) Linear plasmids and chromosomes in bacteria. Molecular microbiology, 10(5), 917-922.

Holmes FL & Meselson S (2001. The Replication of DNA: A History of the Most Beautiful Experiment in Biology.

Iwasaki W, Miya Y, Horikoshi N, Osakabe A, Taguchi H, Tachiwana H ... & Kurumizaka H (2013) Contribution of histone N-terminal tails to the structure and stability of nucleosomes. FEBS open bio, 3, 363-369.

İçsel C (2013) 2-(Hidroksimetil) Piridin ve 2-(2-Hidroksietil) Piridin ligantları içeren palladyum (II) ve platin (II) komplekslerinin sentezi, kristal yapıları, spektroskopik, termik ve DNA bağlanma özellikleri (Doctoral dissertation, Bursa Uludag University (Turkey)).

Jacobs HT & Holt IJ (1998) The mitochondrial genetic system. In Mitochondrial DNA Mutations in Aging, Disease and Cancer (pp. 43-83). Berlin, Heidelberg: Springer Berlin Heidelberg.

Jasencakova Z, Meister A & Schubert I (2001) Chromatin organization and its relation to replication and histone acetylation during the cell cycle in barley. Chromosoma, 110, 83-92.

Jasencakova Z, Meister A, Walter J, Turner BM & Schubert I (2000) Histone H4 acetylation of euchromatin and heterochromatin is cell cycle dependent and correlated with replication rather than with transcription. The Plant Cell, 12(11), 2087-2100.

Kaplan CD and Kornberg RD (2008) A bridge to transcription by RNA polymerase. Journal of biology, 7, 1-4.

Kellett A, Molphy Z, Slator C, McKee V & Farrell NP (2019) Molecular methods for assessment of non-covalent metallodrug–DNA interactions. Chemical Society Reviews, 48(4), 971-988.

Kim M, Mahmood M, Reznik E & Gammage PA (2022) Mitochondrial DNA is a major source of driver mutations in cancer. Trends in Cancer.

Koprinarova M, Schnekenburger M & Diederich M (2016) Role of histone acetylation in cell cycle regulation. Current topics in medicinal chemistry, 16(7), 732-744.

Krall JB, Nichols PJ, Henen MA, Vicens Q & Vögeli B (2023) Structure and Formation of Z-DNA and Z-RNA. Molecules, 28(2), 843.

Ku C, Nelson-Sathi S, Roettger M, Garg S, Hazkani-Covo E & Martin WF (2015) Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes. Proceedings of the National Academy of Sciences, 112(33), 10139-10146.

Lächelt U & Wagner E (2015) Nucleic acid therapeutics using polyplexes: a journey of 50 years (and beyond). Chemical reviews, 115(19), 11043-11078.

Lo WS, Huang YY & Kuo CH (2016) Winding paths to simplicity: genome evolution in facultative insect symbionts. FEMS Microbiology Reviews, 40(6), 855-874.

Maeshima K, Tamura S, Hansen JC & Itoh Y (2020) Fluid-like chromatin: Toward understanding the real chromatin organization present in the cell. Current opinion in cell biology, 64, 77-89.

Mahfooz S, Srivastava A, Yadav MC & Tahoor A (2019) Comparative genomics in phytopathogenic prokaryotes reveals the higher relative abundance and density of long-SSRs in the smallest prokaryotic genome. 3 Biotech, 9, 1-11.

Masłowska-Górnicz A, van den Bosch MR, Saccenti E & Suarez-Diez M (2022) A large-scale analysis of codon usage bias in 4868 bacterial genomes shows association of codon adaptation index with GC content, protein functional domains and bacterial phenotypes. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 1865(6), 194826.

Minchin S & Lodge J (2019) Understanding biochemistry: structure and function of nucleic acids. Essays in biochemistry, 63(4), 433-456.

Nielsen S, Yuzenkova Y and Zenkin N (2013) Mechanism of eukaryotic RNA polymerase III transcription termination. Science, 340, 1577-1580.

O'Brien J, Hayder H, Zayed Y, Peng C. (2018) Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation. Front Endocrinol (Lausanne), 9, 402.

Ohyama T, Potaman VN & Sinden RR (2005) DNA: alternative conformations and biology. DNA conformation and transcription, 3-17.

Ou HD, Phan S, Deerinck TJ, Thor A, Ellisman MH & O’shea CC (2017) ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells. Science, 357(6349).

Piovesan A, Pelleri MC, Antonaros F, Strippoli P, Caracausi M & Vitale L (2019) On the length, weight and GC content of the human genome. BMC research notes, 12(1), 1-7.

Ponnuswamy PK& Gromiha MM (1994) On the conformational stability of oligonucleotide duplexes and tRNA molecules. Journal of theoretical biology, 169(4), 419-432.

Raina M, Ibba M (2014) tRNAs as regulators of biological processes. Front Genet. 5:171.

Rastogi SC (2006) Cell and molecular biology. New Age International.

Ren Z, Liao Q, Karaboja X, Barton IS, Schantz EG, Mejia-Santana A ... & Wang X (2022) Conformation and dynamic interactions of the multipartite genome in Agrobacterium tumefaciens. Proceedings of the National Academy of Sciences, 119(6).

Romiguier J, Ranwez V, Douzery EJ & Galtier N (2010) Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome research, 20(8), 1001-1009.

Rouzina I & Bloomfield VA (2001) Force-induced melting of the DNA double helix 1. Thermodynamic analysis. Biophysical journal, 80(2), 882-893.

Ryu WS (2017) DNA viruses. In Molecular Virology of Human Pathogenic Viruses. Academic Press, Elsevier.

Ravanat JL, Guicherd P, Tuce Z & Cadet J (1999) Simultaneous determination of five oxidative DNA lesions in human urine. Chemical research in toxicology, 12(9), 802-808.

Palmer JD (1985) Chloroplast DNA and molecular phylogeny. Bioessays, 2(6), 263-267.

Penta JS, Johnson FM, Wachsman JT & Copeland WC (2001) Mitochondrial DNA in human malignancy. Mutation Research/Reviews in Mutation Research, 488(2), 119-133.

Perry AS & Wolfe KH (2002) Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat. Journal of molecular evolution, 55, 501-508.

Peyrard M (2004) Nonlinear dynamics and statistical physics of DNA. Nonlinearity, 17(2), R1.

Pillay M & Mazzella C (1997) Chloroplast genome differences between Paspalum dilatatum Poir and the related species P. notatum Flugge. Theoretical and applied genetics, 95, 696-701.

Rich A & Zhang S (2003) Z-DNA: the long road to biological function. Nature Reviews Genetics, 4(7), 566-572.

Salton MRJ and Kim KS (1996) Structure. Eds; Baron S, In Medical Microbiology. 4th edition. The University of Texas Medical Branch at Galveston, USA.

Schapira AH (2006) Mitochondrial disease. The Lancet, 368(9529), 70-82.

Shakya A, Park S, Rana N & King JT (2020) Liquid-liquid phase separation of histone proteins in cells: role in chromatin organization. Biophysical journal, 118(3), 753-764.

Shamsi MH & Kraatz HB (2013). Interactions of metal ions with DNA and some applications. Journal of Inorganic and Organometallic Polymers and Materials, 23, 4-23.

Shaw J, Lickey EB, Beck JT, Farmer SB, Liu W, Miller J, ... & Small R L (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American journal of botany, 92(1), 142-166.

Sugiura M (1992) The chloroplast genome pp. 149-168. Springer Netherlands.

Smith AL, Whitehall JC & Greaves LC (2022) Mitochondrial DNA mutations in ageing and cancer. Molecular Oncology, 16(18), 3276-3294.

Sobell HM, Tsai CC, Gilbert SG, Jain SC and Sakore TD (1976) Organization of DNA in chromatin, Proceedings of the National Academy of Sciences of the United States of America, 73 (9), 3068-3072.

Šponer J, Mládek A, Šponer J E, Svozil D, Zgarbová M, Banáš, P ... & Otyepka M (2012) The DNA and RNA sugar–phosphate backbone emerges as the key player. An overview of quantum-chemical, structural biology and simulation studies. Physical Chemistry Chemical Physics, 14(44), 15257-15277.

Storz G., 2002. An expanding universe of noncoding RNAs. Science. 296 (5571), 1260–63.

Şoroğlu CV, Berkay EG & Vural B Mitokondriyal DNA, Anaerkil Kalıtım ve İnsan Mitochondrial DNA, Maternal Inheritance and Human.

Taanman JW (1999) The mitochondrial genome: structure, transcription, translation and replication. Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1410(2), 103-123.

Taberlet P, Gielly L, Pautou G & Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant molecular biology, 17, 1105-1109.

Takizawa Y & Kurumizaka H (2022) Chromatin structure meets cryo-EM: Dynamic building blocks of the functional architecture. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 194851.

Taylor R, Turnbull D (2005) Mitochondrial DNA mutations in human disease. Nature Review Genetics. 6:389-402.

Tremethick DJ (2007) Higher-order structures of chromatin: the elusive 30 nm fiber. Cell, 128(4), 651-654.

Valadkhan S, Gunawardane LS (2013) Role of small nuclear RNAs in eukaryotic gene expression. Essays Biochem 54, 79-90.

Van Lint S, Heirman C, Thielemans K, Breckpot K (2013) mRNA: From a chemical blueprint for protein production to an off-the-shelf therapeutic. Hum Vaccin Immunother. 9(2), 265-274.

Wallace DC (1992). Diseases of the mitochondrial DNA. Annual review of biochemistry, 61(1), 1175-1212.

Wallace DC (1994) Mitochondrial DNA sequence variation in human evolution and disease. Proceedings of the National academy of Sciences, 91(19), 8739-8746.

Wang D and Farhana A (2023) Biochemistry, RNA Structure. StatPearls Publishing.

Wei H, Zhou B, Zhang F, Tu Y, Hu Y, Zhang B, Zhai Q (2013) Profiling and identification of small rDNA-derived RNAs and their potential biological functions. PLOS ONE. 8 (2), e56842.

Wiesner RJ, Rüegg JC & Morano I (1992) Counting target molecules by exponential polymerase chain reaction: copy number of mitochondrial DNA in rat tissues. Biochemical and biophysical research communications, 183(2), 553-559.

Wing R, Drew H, Takano T, Broka C, Tanaka S, Itakura K & Dickerson RE (1980) Crystal structure analysis of a complete turn of B-DNA. Nature, 287(5784), 755-758.

Wright AF, Murphy MP and Turnbull DM (2009). Do organellar genomes function as longterm redox damage sensors, Trends in Genetics, 25 (6), 253–261.

Woodcock CL, Skoultchi AI & Fan Y (2006). Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length. Chromosome Research, 14, 17-25.

Yakovchuk P, Protozanova E & Frank-Kamenetskii MD (2006) Base-stacking and base-pairing contributions into thermal stability of the DNA double helix. Nucleic acids research, 34(2), 564-574.

Yang DL, Huang K, Deng D, Zeng Y, Wang Z, Zhang Y (2023) DNA-dependent RNA polymerases in plants. The Plant Cell, koad195.

Yıldırım A & Kandemir N (2001) Genetik markörler ve analiz metodları. Bitki Biyoteknolojisi II., Bölüm, 23, 334-363.

Zhao M, Tao Y & Peng GH (2020) The role of histone acetyltransferases and histone deacetylases in photoreceptor differentiation and degeneration. International Journal of Medical Sciences, 17(10), 1307.

Zhu W, Qin W, Sauter ER (2004). Large-scale mitochondrial DNA deletion mutations and nuclear genome instability in human breast cancer. Cancer Detect Prev 28:119-26.

Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R. Young IG (1981) Sequence and organization of the human mitochondrial genome. Nature 290:457-65.

Bannister AJ & Kouzarides T (2011). Regulation of chromatin by histone modifications. Cell research, 21(3), 381-395.

Bell SP & Labib K (2016) Chromosome duplication in Saccharomyces cerevisiae. Genetics, 203(3), 1027-1067.

Bendich AJ (2007) The size and form of chromosomes are constant in the nucleus, but highly variable in bacteria, mitochondria and chloroplasts. BioEssays, 29(5), 474-483.

Bisen PS, Debnath M & Prasad GB (2012) Microbes: concepts and applications. John Wiley & Sons.

Büyükünal-Bal EB, Karataş M (2007) Nükleik Asitler, " Moleküler Biyoloji-Protein Sentezi ve Yıkımı" Editörler, Yıldırım A, Bardakçı F, Karataş M, Tanyolaç B. Nobel Yayın Dağıtım. 55-91.

Campbell AM (1993) Genome organization in prokaryotes. Current Opinion in Genetics & Development, 3(6), 837-844.

Champe P, Harvey RA & Ferrier D (1994) Biochemestry. Lippincott‘s illustrated reviews, 2, 127-129.

Chen Z J & Tian L (2007) Roles of dynamic and reversible histone acetylation in plant development and polyploidy. Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression, 1769(5-6), 295-307.

Chen XJ and Butow RA (2005) The organization and inheritance of the mitochondrial genome. Nature Reviews Genetics, 6(11), 815-825.

Chen Q, Yan M, Cao Z, Li X, Zhang Y, Shi J, et al (2016) Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder. Science. 351, 397–400.

Chinnery PF and Hudson G (2013) Mitochondrial genetics, The British Medical Bulletin, 106 (1), 135–159.

Clausen-Schaumann, H, Rief M, Tolksdorf C.& Gaub HE (2000) Mechanical stability of single DNA molecules. Biophysical journal, 78(4), 1997-2007.

Cooper G & Adams K (2023) The cell: a molecular approach. Oxford University Press.

Çakmak H (2014) Fiziksel Ve Kimyasal Çapraz Bağlı DNA Hidrojellerinin Sentezi ve Karakterizasyonu Fen Bilimleri Enstitüsü.

Condrat CE, Thompson DC, Barbu MG, Bugnar OL, Boboc A, Cretoiu D, Suciu N, Cretoiu SM, Voinea SC (2020) miRNAs as Biomarkers in Disease: Latest Findings Regarding Their Role in Diagnosis and Prognosis. Cells, 9(2)

Dahm R (2005) Friedrich Miescher and the discovery of DNA. Developmental biology, 278(2), 274-288.

Dahm R (2008) Discovering DNA: Friedrich Miescher and the early years of nucleic acid research. Hum Genet 122, 565–581.

Dana H, Chalbatani GM, Mahmoodzadeh H, Karimloo R, Rezaiean O, Moradzadeh A, Mehmandoost N, Moazzen F, Mazraeh A, Marmari V, Ebrahimi M, Rashno MM, Abadi SJ, Gharagouzlo E (2017) Molecular Mechanisms and Biological Functions of siRNA. Int J Biomed Sci, 13, 48-57.

Dinant C, Houtsmuller AB & Vermeulen W (2008) Chromatin structure and DNA damage repair. Epigenetics & chromatin 1(1), 1-13.

Dobrogojski J, Adamiec M & Luciński R (2020). The chloroplast genome: a review. Acta Physiologiae Plantarum, 42, 1-13.

Durbin RM and Landrop M (2010) A map of human genome variation from population scale sequencing. Nature, 467(7319), 1061.

Erler J, Zhang R, Petridis L, Cheng X, Smith JC & Langowski J (2014) The role of histone tails in the nucleosome: a computational study. Biophysical journal, 107(12), 2911-2922.

Fatica A, Bozzoni I (2014) Long non-coding RNAs: new players in cell differentiation and development. Nature Reviews Genetics. 15 (1), 7–21.

Fernández-Silva P, Enriquez JA & Montoya J (2003). Replication and transcription of mammalian mitochondrial DNA. Experimental physiology, 88(1), 41-56.

Fyodorov DV, Zhou BR, Skoultchi AI & Bai Y (2018) Emerging roles of linker histones in regulating chromatin structure and function. Nature reviews Molecular cell biology, 19(3), 192-206.

Galperin MY (2007) Linear chromosomes in bacteria: no straight edge advantage?. Environmental microbiology, 9(6), 1357.

Gavrilov K and Saltzman WM (2012) Therapeutic siRNA: principles, challenges, and strategies. Yale J Biol Med., 85(2), 187-200.

Giles RE, Blanc H, Cann HM and Wallace DC (1980) Maternal inheritance of human mitochondrial DNA. Proceedings of the National academy of Sciences, 77(11), 6715-6719..

Griffith, F. (1928). The significance of pneumococcal types. Epidemiology & Infection, 27(2), 113-159.

Güneş HV (2022) Moleküler Hücre Biyolojisi. İstanbul Tıp Kitabevleri, İstanbul.

Haag JR and Pikaard CS (2011) Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nature reviews Molecular cell biology, 12(8), 483-492.

Haery L, Thompson RC & Gilmore TD (2015) Histone acetyltransferases and histone deacetylases in B-and T-cell development, physiology and malignancy. Genes & cancer, 6(5-6), 184.

Hernandez V (2019) The Hershey-Chase Experiments (1952) by Alfred Hershey and Martha Chase. Embryo Project Encyclopedia.

Hershey AD & Chase M (2017) Independent functions of viral protein and nucleic acid in growth of bacteriophage (pp. 121-139). Springer Berlin Heidelberg.

Hershey AD (2000) We can sleep later:Alfred D. Hershey and the origins of molecular biology. CHSL Press.

Hinnebusch J & Tilly K (1993) Linear plasmids and chromosomes in bacteria. Molecular microbiology, 10(5), 917-922.

Holmes FL & Meselson S (2001. The Replication of DNA: A History of the Most Beautiful Experiment in Biology.

Iwasaki W, Miya Y, Horikoshi N, Osakabe A, Taguchi H, Tachiwana H ... & Kurumizaka H (2013) Contribution of histone N-terminal tails to the structure and stability of nucleosomes. FEBS open bio, 3, 363-369.

İçsel C (2013) 2-(Hidroksimetil) Piridin ve 2-(2-Hidroksietil) Piridin ligantları içeren palladyum (II) ve platin (II) komplekslerinin sentezi, kristal yapıları, spektroskopik, termik ve DNA bağlanma özellikleri (Doctoral dissertation, Bursa Uludag University (Turkey)).

Jacobs HT & Holt IJ (1998) The mitochondrial genetic system. In Mitochondrial DNA Mutations in Aging, Disease and Cancer (pp. 43-83). Berlin, Heidelberg: Springer Berlin Heidelberg.

Jasencakova Z, Meister A & Schubert I (2001) Chromatin organization and its relation to replication and histone acetylation during the cell cycle in barley. Chromosoma, 110, 83-92.

Jasencakova Z, Meister A, Walter J, Turner BM & Schubert I (2000) Histone H4 acetylation of euchromatin and heterochromatin is cell cycle dependent and correlated with replication rather than with transcription. The Plant Cell, 12(11), 2087-2100.

Kaplan CD and Kornberg RD (2008) A bridge to transcription by RNA polymerase. Journal of biology, 7, 1-4.

Kellett A, Molphy Z, Slator C, McKee V & Farrell NP (2019) Molecular methods for assessment of non-covalent metallodrug–DNA interactions. Chemical Society Reviews, 48(4), 971-988.

Kim M, Mahmood M, Reznik E & Gammage PA (2022) Mitochondrial DNA is a major source of driver mutations in cancer. Trends in Cancer.

Koprinarova M, Schnekenburger M & Diederich M (2016) Role of histone acetylation in cell cycle regulation. Current topics in medicinal chemistry, 16(7), 732-744.

Krall JB, Nichols PJ, Henen MA, Vicens Q & Vögeli B (2023) Structure and Formation of Z-DNA and Z-RNA. Molecules, 28(2), 843.

Ku C, Nelson-Sathi S, Roettger M, Garg S, Hazkani-Covo E & Martin WF (2015) Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes. Proceedings of the National Academy of Sciences, 112(33), 10139-10146.

Lächelt U & Wagner E (2015) Nucleic acid therapeutics using polyplexes: a journey of 50 years (and beyond). Chemical reviews, 115(19), 11043-11078.

Lo WS, Huang YY & Kuo CH (2016) Winding paths to simplicity: genome evolution in facultative insect symbionts. FEMS Microbiology Reviews, 40(6), 855-874.

Maeshima K, Tamura S, Hansen JC & Itoh Y (2020) Fluid-like chromatin: Toward understanding the real chromatin organization present in the cell. Current opinion in cell biology, 64, 77-89.

Mahfooz S, Srivastava A, Yadav MC & Tahoor A (2019) Comparative genomics in phytopathogenic prokaryotes reveals the higher relative abundance and density of long-SSRs in the smallest prokaryotic genome. 3 Biotech, 9, 1-11.

Masłowska-Górnicz A, van den Bosch MR, Saccenti E & Suarez-Diez M (2022) A large-scale analysis of codon usage bias in 4868 bacterial genomes shows association of codon adaptation index with GC content, protein functional domains and bacterial phenotypes. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 1865(6), 194826.

Minchin S & Lodge J (2019) Understanding biochemistry: structure and function of nucleic acids. Essays in biochemistry, 63(4), 433-456.

Nielsen S, Yuzenkova Y and Zenkin N (2013) Mechanism of eukaryotic RNA polymerase III transcription termination. Science, 340, 1577-1580.

O'Brien J, Hayder H, Zayed Y, Peng C. (2018) Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation. Front Endocrinol (Lausanne), 9, 402.

Ohyama T, Potaman VN & Sinden RR (2005) DNA: alternative conformations and biology. DNA conformation and transcription, 3-17.

Ou HD, Phan S, Deerinck TJ, Thor A, Ellisman MH & O’shea CC (2017) ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells. Science, 357(6349).

Piovesan A, Pelleri MC, Antonaros F, Strippoli P, Caracausi M & Vitale L (2019) On the length, weight and GC content of the human genome. BMC research notes, 12(1), 1-7.

Ponnuswamy PK& Gromiha MM (1994) On the conformational stability of oligonucleotide duplexes and tRNA molecules. Journal of theoretical biology, 169(4), 419-432.

Raina M, Ibba M (2014) tRNAs as regulators of biological processes. Front Genet. 5:171.

Rastogi SC (2006) Cell and molecular biology. New Age International.

Ren Z, Liao Q, Karaboja X, Barton IS, Schantz EG, Mejia-Santana A ... & Wang X (2022) Conformation and dynamic interactions of the multipartite genome in Agrobacterium tumefaciens. Proceedings of the National Academy of Sciences, 119(6).

Romiguier J, Ranwez V, Douzery EJ & Galtier N (2010) Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome research, 20(8), 1001-1009.

Rouzina I & Bloomfield VA (2001) Force-induced melting of the DNA double helix 1. Thermodynamic analysis. Biophysical journal, 80(2), 882-893.

Ryu WS (2017) DNA viruses. In Molecular Virology of Human Pathogenic Viruses. Academic Press, Elsevier.

Ravanat JL, Guicherd P, Tuce Z & Cadet J (1999) Simultaneous determination of five oxidative DNA lesions in human urine. Chemical research in toxicology, 12(9), 802-808.

Palmer JD (1985) Chloroplast DNA and molecular phylogeny. Bioessays, 2(6), 263-267.

Penta JS, Johnson FM, Wachsman JT & Copeland WC (2001) Mitochondrial DNA in human malignancy. Mutation Research/Reviews in Mutation Research, 488(2), 119-133.

Perry AS & Wolfe KH (2002) Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat. Journal of molecular evolution, 55, 501-508.

Peyrard M (2004) Nonlinear dynamics and statistical physics of DNA. Nonlinearity, 17(2), R1.

Pillay M & Mazzella C (1997) Chloroplast genome differences between Paspalum dilatatum Poir and the related species P. notatum Flugge. Theoretical and applied genetics, 95, 696-701.

Rich A & Zhang S (2003) Z-DNA: the long road to biological function. Nature Reviews Genetics, 4(7), 566-572.

Salton MRJ and Kim KS (1996) Structure. Eds; Baron S, In Medical Microbiology. 4th edition. The University of Texas Medical Branch at Galveston, USA.

Schapira AH (2006) Mitochondrial disease. The Lancet, 368(9529), 70-82.

Shakya A, Park S, Rana N & King JT (2020) Liquid-liquid phase separation of histone proteins in cells: role in chromatin organization. Biophysical journal, 118(3), 753-764.

Shamsi MH & Kraatz HB (2013). Interactions of metal ions with DNA and some applications. Journal of Inorganic and Organometallic Polymers and Materials, 23, 4-23.

Shaw J, Lickey EB, Beck JT, Farmer SB, Liu W, Miller J, ... & Small R L (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American journal of botany, 92(1), 142-166.

Sugiura M (1992) The chloroplast genome pp. 149-168. Springer Netherlands.

Smith AL, Whitehall JC & Greaves LC (2022) Mitochondrial DNA mutations in ageing and cancer. Molecular Oncology, 16(18), 3276-3294.

Sobell HM, Tsai CC, Gilbert SG, Jain SC and Sakore TD (1976) Organization of DNA in chromatin, Proceedings of the National Academy of Sciences of the United States of America, 73 (9), 3068-3072.

Šponer J, Mládek A, Šponer J E, Svozil D, Zgarbová M, Banáš, P ... & Otyepka M (2012) The DNA and RNA sugar–phosphate backbone emerges as the key player. An overview of quantum-chemical, structural biology and simulation studies. Physical Chemistry Chemical Physics, 14(44), 15257-15277.

Storz G., 2002. An expanding universe of noncoding RNAs. Science. 296 (5571), 1260–63.

Şoroğlu CV, Berkay EG & Vural B Mitokondriyal DNA, Anaerkil Kalıtım ve İnsan Mitochondrial DNA, Maternal Inheritance and Human.

Taanman JW (1999) The mitochondrial genome: structure, transcription, translation and replication. Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1410(2), 103-123.

Taberlet P, Gielly L, Pautou G & Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant molecular biology, 17, 1105-1109.

Takizawa Y & Kurumizaka H (2022) Chromatin structure meets cryo-EM: Dynamic building blocks of the functional architecture. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 194851.

Taylor R, Turnbull D (2005) Mitochondrial DNA mutations in human disease. Nature Review Genetics. 6:389-402.

Tremethick DJ (2007) Higher-order structures of chromatin: the elusive 30 nm fiber. Cell, 128(4), 651-654.

Valadkhan S, Gunawardane LS (2013) Role of small nuclear RNAs in eukaryotic gene expression. Essays Biochem 54, 79-90.

Van Lint S, Heirman C, Thielemans K, Breckpot K (2013) mRNA: From a chemical blueprint for protein production to an off-the-shelf therapeutic. Hum Vaccin Immunother. 9(2), 265-274.

Wallace DC (1992). Diseases of the mitochondrial DNA. Annual review of biochemistry, 61(1), 1175-1212.

Wallace DC (1994) Mitochondrial DNA sequence variation in human evolution and disease. Proceedings of the National academy of Sciences, 91(19), 8739-8746.

Wang D and Farhana A (2023) Biochemistry, RNA Structure. StatPearls Publishing.

Wei H, Zhou B, Zhang F, Tu Y, Hu Y, Zhang B, Zhai Q (2013) Profiling and identification of small rDNA-derived RNAs and their potential biological functions. PLOS ONE. 8 (2), e56842.

Wiesner RJ, Rüegg JC & Morano I (1992) Counting target molecules by exponential polymerase chain reaction: copy number of mitochondrial DNA in rat tissues. Biochemical and biophysical research communications, 183(2), 553-559.

Wing R, Drew H, Takano T, Broka C, Tanaka S, Itakura K & Dickerson RE (1980) Crystal structure analysis of a complete turn of B-DNA. Nature, 287(5784), 755-758.

Wright AF, Murphy MP and Turnbull DM (2009). Do organellar genomes function as longterm redox damage sensors, Trends in Genetics, 25 (6), 253–261.

Woodcock CL, Skoultchi AI & Fan Y (2006). Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length. Chromosome Research, 14, 17-25.

Yakovchuk P, Protozanova E & Frank-Kamenetskii MD (2006) Base-stacking and base-pairing contributions into thermal stability of the DNA double helix. Nucleic acids research, 34(2), 564-574.

Yang DL, Huang K, Deng D, Zeng Y, Wang Z, Zhang Y (2023) DNA-dependent RNA polymerases in plants. The Plant Cell, koad195.

Yıldırım A & Kandemir N (2001) Genetik markörler ve analiz metodları. Bitki Biyoteknolojisi II., Bölüm, 23, 334-363.

Zhao M, Tao Y & Peng GH (2020) The role of histone acetyltransferases and histone deacetylases in photoreceptor differentiation and degeneration. International Journal of Medical Sciences, 17(10), 1307.

Zhu W, Qin W, Sauter ER (2004). Large-scale mitochondrial DNA deletion mutations and nuclear genome instability in human breast cancer. Cancer Detect Prev 28:119-26.